View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_2 (Length: 561)
Name: NF10430_low_2
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Complemental strand, 44396147 - 44395620
Alignment:
| Q |
16 |
acatcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagctttaccaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44396147 |
acatcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagctttaccaa |
44396048 |
T |
|
| Q |
116 |
tcctagcataaaaatccttacttttactaaaagtaaccaaatcttcaataatctctttcttcttctgaggttccatagccattgtttcaaaagttgcagg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44396047 |
tcctagcataaaaatccttacttttactaaaagtaaccaaatcttcaataatctctttcttcttctgaggttccatagccattgtttcaaaagttgcagg |
44395948 |
T |
|
| Q |
216 |
atgttcaaaaacaatgtgactccacatagtttgcttatagctaggccatttgtaaccaggactgtttgtatacaatttcctctgtctgttcctcaaacga |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44395947 |
atgttcaaaaacaatgtgactccacatagtttgcttatagctaggccatttgtaaccaggactgtttgtatacaatttcctctgtctgttcctcaaacga |
44395848 |
T |
|
| Q |
316 |
atctctttcccttctttcatcacatgatccaaatatgaaccagttattgtatctctatactttttatgaaaagtgagtttgtagaatctcttctcttgtt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44395847 |
atctctttcccttctttcatcacatgatccaaatatgaaccagttattgtatctctatactttttatgaaaagtgagtttgtagaatctcttctcttgtt |
44395748 |
T |
|
| Q |
416 |
cttgataataaggcatggatcttgattgtgacataactttgctacaaacccaataaaccttgacacctttataatcatcagttactctttcatattcatc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44395747 |
cttgataataaggcatggatcttgattgtgacataactttgctacaaacccaataaaccttgacacctttataatcatcagttactctttcatattcatc |
44395648 |
T |
|
| Q |
516 |
catggttaaaaccaagttggtgctatct |
543 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
44395647 |
catggttaaaaccaagttggtgctatct |
44395620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 53395587 - 53395498
Alignment:
| Q |
18 |
atcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagc |
107 |
Q |
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||||||||| | ||||||||||||||||||||||| | ||||| ||||| |||||||||||| |||| | |||||| ||||||||||| |
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| T |
53395587 |
atcataaccaagaaaattagccatagcagcaatcatgctagattttccagttcctggaggaccataaagaagataacctcttttccaagc |
53395498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 53395452 - 53395396
Alignment:
| Q |
153 |
caaatcttcaataatctctttcttcttctgaggttccatagccattgtttcaaaagt |
209 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||| ||| |||||||| |
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|
| T |
53395452 |
caaatcttccataatctctttcttcttcataggatccatagccaatgtatcaaaagt |
53395396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 6971232 - 6971021
Alignment:
| Q |
18 |
atcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagctttaccaatc |
117 |
Q |
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|
|||||| || |||||||| ||||| ||||||||||||||||| || ||||| |||||||||||| ||||||||||||| ||||||||||| | ||||| |
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| T |
6971232 |
atcatagcctaacaaatttgccatggcagcaatcattgttgactttccagtccctggaggaccataaagtaaataacctcttttccaagcccttccaatt |
6971133 |
T |
|
| Q |
118 |
ctagcataaaaatccttacttttactaaaagtaaccaaatcttcaataatctctttcttcttctgaggttccatagccattgtttcaaaagttgcaggat |
217 |
Q |
| |
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|| ||||| || || | ||||||||| |||| | ||| ||||| ||| ||||||||||| |||||||| | ||||||||| |||| ||||| |
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|
| T |
6971132 |
cttgcatagaattcaccagctttactaaatgtaataagatcatcaatgatcattttcttcttctcgaaatccatagctaatgtttcaaatgttgaaggat |
6971033 |
T |
|
| Q |
218 |
gttcaaaaacaa |
229 |
Q |
| |
|
||||||| |||| |
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|
| T |
6971032 |
gttcaaacacaa |
6971021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 11449981 - 11449895
Alignment:
| Q |
18 |
atcataacccaacaaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttcca |
104 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||| || ||||| |||||||||||| ||||||||||||| |||||||| |
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| T |
11449981 |
atcataacttaacagattagccatagcaccaatcattgttgactttccagtccctggaggaccataaagtaaataacctcttttcca |
11449895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 1800889 - 1800807
Alignment:
| Q |
31 |
aaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagctttacc |
113 |
Q |
| |
|
||||| |||||||| || ||||| || |||||||| || |||||||||||| ||||||||||||| | ||||||||| ||||| |
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|
| T |
1800889 |
aaattcgccatagcggctatcatagtagatttacctgttcctggaggaccataaagtaaataaccgcgtttccaagccttacc |
1800807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 1800718 - 1800681
Alignment:
| Q |
202 |
tcaaaagttgcaggatgttcaaaaacaatgtgactcca |
239 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |
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| T |
1800718 |
tcaaaagtcgcaggatgttcaaaaacaatgtgactcca |
1800681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 1800554 - 1800513
Alignment:
| Q |
366 |
atctctatactttttatgaaaagtgagtttgtagaatctctt |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| ||||||| |
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|
| T |
1800554 |
atctctatgctttttatgaaaagtgagtttatagtatctctt |
1800513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 2842321 - 2842237
Alignment:
| Q |
31 |
aaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagctttaccaa |
115 |
Q |
| |
|
|||||||| ||||| | ||||| || |||||||| || ||||||||||||||||||| |||||| | |||||||||||| |||| |
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|
| T |
2842321 |
aaattagcaatagccgatatcatggtagatttaccggttcctggaggaccaaaaagtagataaccacgtttccaagcttttccaa |
2842237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 2828963 - 2828887
Alignment:
| Q |
31 |
aaattagccatagcagcaatcattgttgatttaccagtacctggaggaccaaaaagtaaataaccccttttccaagc |
107 |
Q |
| |
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|||||||| ||||| | ||||| || ||||| ||||| || |||||||||||||||| |||||| | ||||||||| |
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|
| T |
2828963 |
aaattagcaatagctgatatcatcgtagattttccagttccaggaggaccaaaaagtagataaccacgtttccaagc |
2828887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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