View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_4 (Length: 485)
Name: NF10430_low_4
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 44 - 468
Target Start/End: Complemental strand, 36537419 - 36536994
Alignment:
| Q |
44 |
aagcttcattaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagattttctacgaagagtagatgtaccc |
143 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36537419 |
aagcttcattaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagattttctacgaagagtagatgtaccc |
36537320 |
T |
|
| Q |
144 |
ataacgaggacgattagggaaaccgctagaagggtcttgatgatattttccttgagacctttctttaggggccactgtaggtactattttaagtctactg |
243 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
36537319 |
ataacgaggaagattagggaaaccgctagaagggtcttgatgatattttccttgagacctttctttagggcccactgtaggtactattttaagtctattg |
36537220 |
T |
|
| Q |
244 |
taagcaaagtttgatattgatattcagcattatctctctcacttatgcagctaattgtgaatgtatcgtttttatggcttaag-nnnnnnntagtatttg |
342 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36537219 |
taagcaaagtttgatattgttattcagcatcatctctctcacttatgcagctaattgtgaatgtatcgtttttatggcttaagaaaaaaaatagtatttg |
36537120 |
T |
|
| Q |
343 |
aaaagcaaatgattagaacaaccatctcattccatgcacttaatattatgcactgtactgagtagaagttatacaaatagaataatggaattacaatcta |
442 |
Q |
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| T |
36537119 |
aaaagcaaatgattagaacaaccatctcattccatgcacttaatattatgtactgtactgaatagaagttatacaaatagaataatggaattacaatcta |
36537020 |
T |
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| Q |
443 |
caagaaaatccaaccactataattac |
468 |
Q |
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| T |
36537019 |
caagaaaatccaaccattataattac |
36536994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36537529 - 36537486
Alignment:
| Q |
1 |
atttaaatgatttaggtgtcgagttcatggatttcagacttaga |
44 |
Q |
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| T |
36537529 |
atttaaatgatttaggtgtcgagttcatggatttcagacttaga |
36537486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 10231604 - 10231534
Alignment:
| Q |
52 |
ttaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagatttt |
122 |
Q |
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|||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
10231604 |
ttaattgcttgtaatcaaacgttgtagcacactgtgcaaacattcaatcatagtggaagaccgtggatttt |
10231534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 31633885 - 31633822
Alignment:
| Q |
59 |
cttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtagatttt |
122 |
Q |
| |
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||||| |||||||||| ||||||| ||||||||| ||||||||||||||||| |||| |||||| |
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| T |
31633885 |
cttgtcatcaaaccttgtagcacattgtgcaaactttcaatcatagtggaaggtcgtggatttt |
31633822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 23333864 - 23333946
Alignment:
| Q |
52 |
ttaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcatagtggaagatcgtaga-ttttctacgaagagt |
133 |
Q |
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||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||| ||||| ||||||||||||||| |
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| T |
23333864 |
ttaattacttgtaatcaaaccttgttgcacatcgtgcaaacattcaatcattgtggaagattgtagatttttctacgaagagt |
23333946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 17275062 - 17275121
Alignment:
| Q |
44 |
aagcttcattaattacttgtaatcaaaccttttagcacactgtgcaaacattcaatcata |
103 |
Q |
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||||||| |||||||||||| |||||||||| ||| || |||||||||||||||||||| |
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| T |
17275062 |
aagcttcgttaattacttgttatcaaaccttgtagaactttgtgcaaacattcaatcata |
17275121 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 143
Target Start/End: Original strand, 16717131 - 16717232
Alignment:
| Q |
44 |
aagcttcattaattacttgtaatcaaaccttttagca-cactgtgcaaacattcaatcatagtggaagatcgtag-attttctacgaagagtagatgtac |
141 |
Q |
| |
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|||||||||||| |||||||||||||||||| || || | ||||||||||||||| || ||||||||| ||||| ||||||||| |||||| |||||| |
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| T |
16717131 |
aagcttcattaactacttgtaatcaaaccttataacattagtgtgcaaacattcaagcaaagtggaagaccgtagaattttctacaaagagtgaatgtac |
16717230 |
T |
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| Q |
142 |
cc |
143 |
Q |
| |
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|| |
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| T |
16717231 |
cc |
16717232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 13794901 - 13794830
Alignment:
| Q |
52 |
ttaattacttgtaatcaaaccttttagcac-actgtgcaaacattcaatcatagtggaagatcgtagatttt |
122 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
13794901 |
ttaattacttgtaatcaaaccttgtagcacttgggtgcaaacattcattcatagtggaaagtcgtagatttt |
13794830 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 16241990 - 16241941
Alignment:
| Q |
84 |
tgtgcaaacattcaatcatagtggaagatcgtaga-ttttctacgaagag |
132 |
Q |
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||||||||||||||||||||||||||| || |||| |||||||||||||| |
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| T |
16241990 |
tgtgcaaacattcaatcatagtggaaggtcatagatttttctacgaagag |
16241941 |
T |
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