View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_5 (Length: 433)
Name: NF10430_low_5
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 34506218 - 34505808
Alignment:
| Q |
1 |
cccgcaaaagaaacaaacaaaatgatgacacaaatggtaatatattcactcatcatatgtatgtgtgtgagtctaagacggtaaacaagaacaacgtaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
34506218 |
cccgcaaaagaaacaaacaaaatgatgacacaaatggtaatat--------------tatatgtgtgtgagtctaagacagtaaacaagaacaacgtaac |
34506133 |
T |
|
| Q |
101 |
tattacccggaagaagacagtagacattggttctttcctagaaaagcttgtagtgacattcggaaccgacgcatgaatcatacaagacaatgattcccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506132 |
tattacccggaagaagacagtagacattggttctttcctagaaaagcttgtagtgacattcggaaccgacgcatgaatcatacaagacaatgattcccac |
34506033 |
T |
|
| Q |
201 |
atgtttagactcaatgaatctcccacaaacattatcttcttatccttccacctattcaagaaatcctctccattgaac---ctacaccacataaaataat |
297 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
34506032 |
atgtttagactcaatgaatcacccacaaacattatcttcttatccttccacctattcaagaaatcctctccattgaacctgctacaccaca-aaaataat |
34505934 |
T |
|
| Q |
298 |
tactcattacatttgtactaatacattatgagaagatatttagtacactaattatattacataataataattgtcacatatat--------atgaacatt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||| |
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| T |
34505933 |
tactcattacatttgtactaatacattatgagaagatattaagtacactaattatattacaaaatgataattgtcacatatatatatgaacatgaacatt |
34505834 |
T |
|
| Q |
390 |
tacacaaactaaaaataccttggtaa |
415 |
Q |
| |
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|| ||||||||||||||||||||||| |
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| T |
34505833 |
tatacaaactaaaaataccttggtaa |
34505808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 98 - 374
Target Start/End: Complemental strand, 34516265 - 34515990
Alignment:
| Q |
98 |
aactattacccggaagaagacagtagacattggttctttcctagaaaagcttgtagtgacattcggaaccgacgcatgaatcatacaagacaatgattcc |
197 |
Q |
| |
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|||||||||| |||| | |||||||||| || ||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||| |
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| T |
34516265 |
aactattacctggaaaatcacagtagacactgattctttcctagaaaagcttgtagtggcatttggtaccgatgcatgaatcatacaagacaatgattcc |
34516166 |
T |
|
| Q |
198 |
cacatgtttagactcaatgaatctcccacaaacattatcttcttatccttccacctattcaagaaatcctctccattgaacctacaccacataaaataat |
297 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34516165 |
cacatgtttagactcaatgaatcacccacaaacattatctttttacccttccacctattcaagaaatcctctccattgaacctacaccaca-aaaataat |
34516067 |
T |
|
| Q |
298 |
t-actcattacatttgtactaatacattatgagaagatatttagtacactaattatattacataataataattgtcac |
374 |
Q |
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| |||||||||||||| ||| |||||||| ||||||| ||||||||||||||||| |||||| |||| |||| ||||| |
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| T |
34516066 |
ttactcattacatttgcact-atacattaggagaagaaatttagtacactaattacattacaaaatattaatcgtcac |
34515990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 4690036 - 4690122
Alignment:
| Q |
156 |
acattcggaaccgacgcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatctcccacaaacattatcttctta |
242 |
Q |
| |
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||||| || |||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||||| |
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| T |
4690036 |
acattgggcaccgacgcatgaatcatacacgacagtgattcccacatgttcagactcagtgaatcacccacaaacattatcttctta |
4690122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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