View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_6 (Length: 380)
Name: NF10430_low_6
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 22 - 373
Target Start/End: Original strand, 5364219 - 5364570
Alignment:
| Q |
22 |
gagcctatcccacatacagagtcagatttggagaacaatgtaagattttgaaatcattcagaacgatgatacattctatgctgtgtttctttatttcctt |
121 |
Q |
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| T |
5364219 |
gagcctatcccacatacagagtcagatttggagaacaatgtaagattttgaaatcattcagaacgatgatacattctatgctgtgtttctttatttcctt |
5364318 |
T |
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| Q |
122 |
tttaatgacggcttgcagtagaatttgatgtttgaaactagtaaatatcatcattttttaggaatgaaaatatattcaatgtttgttgtctaagttttcc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5364319 |
tttaatgacggcttgcagtagaatttgatgtttgaaactagtaaatatcatcattttttaggaatgaaaatatattcgatgtttgttgtctaagttttcc |
5364418 |
T |
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| Q |
222 |
atgccatatatttacattacctccgtcttctcgatgttatagttagaacttagaattaattcagtaactgaaatcgttaataaattgcatacacataagt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5364419 |
atgccatatatttacattacctccgtcttctcgatgttatagttagaacttagaattaattcagtaactgaaatcgttaataaattgcatacacataagt |
5364518 |
T |
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| Q |
322 |
tatagctagtatcgtatttttcaggttaagaaatgatggcatctctctgctt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
5364519 |
tatagctagtatcgtatttttcaggttaagaaatgatggtatctctctgctt |
5364570 |
T |
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