View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_7 (Length: 342)
Name: NF10430_low_7
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 3016891 - 3016582
Alignment:
| Q |
18 |
aatagaatagaattcaattaatgtacnnnnnnnnttatcaagcacaccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaact |
117 |
Q |
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| T |
3016891 |
aatagaatagaattcaattaatgtacaaaaaaaattatcaagcacaccttcatttggtgatcattgtaaggaccatcaggtgcagtgattcttgttaact |
3016792 |
T |
|
| Q |
118 |
cactcaagcaggaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3016791 |
cactcaagcaggaggcaagggcaactttgacaccaacatctgaatgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttg |
3016692 |
T |
|
| Q |
218 |
aatggacttagaaggtgattgttcaacctttgataagctctttccaacttgctgcagttccaagnnnnnnnntgcaatatcaagcacatgtgattaatat |
317 |
Q |
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| T |
3016691 |
aatggacttagaaggtgattgttcaacctttgataagctctttccaacttgctgcagttccaag-aaaaaaatgcaatatcaagcacatgtgattaatat |
3016593 |
T |
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| Q |
318 |
tttggtcaacc |
328 |
Q |
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||||||||||| |
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| T |
3016592 |
tttggtcaacc |
3016582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 281
Target Start/End: Complemental strand, 3032587 - 3032368
Alignment:
| Q |
62 |
caccttcatttggtgatcattgtaaggaccatcgggtgcagtgattcttgttaactcactcaagcaggaggcaagggcaactttgacaccaacatctgaa |
161 |
Q |
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|||||||||||| ||||| |||||| |||| ||||||||||||||||||| |||||| |||||||||||||| || ||||||||| || |||||||| |
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| T |
3032587 |
caccttcatttgaccatcatcataaggagcatcaggtgcagtgattcttgttatctcactgaagcaggaggcaagagccactttgacatcagcatctgaa |
3032488 |
T |
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| Q |
162 |
tgctttataagtttatcagaaatcaatgctttcaatgatggagagagtgctttttgaatggacttagaaggtgattgttcaacctttgataagctctttc |
261 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||| | || || | || |||||||||||||||| |||||| || || |
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| T |
3032487 |
tgctttataagtttatcagcaattaatgctttcaatgatggagacagtgcatttagcatagattcaggaggtgattgttcaacccttgataggcagcttt |
3032388 |
T |
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| Q |
262 |
caacttgctgcagttccaag |
281 |
Q |
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||| |||||||||||||||| |
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| T |
3032387 |
caatttgctgcagttccaag |
3032368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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