View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10430_low_9 (Length: 312)
Name: NF10430_low_9
Description: NF10430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10430_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 42073922 - 42073645
Alignment:
| Q |
18 |
agcaagttcaagttttctatcaaagtttgatcattttcttcaatttggcttataagggtcttgcaaaattgtttcactgataatcttgattctgagacta |
117 |
Q |
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| T |
42073922 |
agcaagttcaagttttctatcaaagtttgatcattttcttcaatttggcttataagggtcttgcaaaattgtttcactgataatcttgattctgagacta |
42073823 |
T |
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| Q |
118 |
tctgcaaaaacccttctaccattacatcttcattcacaggcatcatcaaattttctccatttccatcaaatggtattccaagtttctcatcacaaagtgg |
217 |
Q |
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| T |
42073822 |
tctgcaaaaacccttctaccattacatcttcattcacaggcatcatcaaattttctccatttccatcaaatggtattccaagtttctcatcacaaagtgg |
42073723 |
T |
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| Q |
218 |
agattcttttgcttgcattgcttgtttcaacgctttcttcaactcttcacagtaaccttccaaatactctagcctttg |
295 |
Q |
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| T |
42073722 |
agattcttttgcttgcattgcttgtttcaacgctttcttcaactcttcacagtaaccttccaaatactcaagcttttg |
42073645 |
T |
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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 24876902 - 24876764
Alignment:
| Q |
22 |
agttcaagttttctatcaaagtttgatcattttcttcaatttggcttataagggtcttgcaaaattgtttcactgataatcttgattctgagactatctg |
121 |
Q |
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||||||| ||||||||||| | |||||| |||||||||| | | |||||||| |||| || || || ||||||||||||||||| || || |||||||| |
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| T |
24876902 |
agttcaaattttctatcaatgagtgatcagtttcttcaatgttgtttataaggttcttacagaactgcttcactgataatcttgactccgatactatctg |
24876803 |
T |
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| Q |
122 |
caaaaacccttctaccattacatcttcattcacaggcat |
160 |
Q |
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| T |
24876802 |
caagaatccctctatcattacttcctcgttcacaggcat |
24876764 |
T |
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