View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10431_low_3 (Length: 351)
Name: NF10431_low_3
Description: NF10431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10431_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 109 - 343
Target Start/End: Complemental strand, 47350230 - 47349996
Alignment:
| Q |
109 |
ctacaatgtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatc |
208 |
Q |
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| T |
47350230 |
ctacaatgtcttccattccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatc |
47350131 |
T |
|
| Q |
209 |
ccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgtatgcatactcctcaatctcaaattgttccgtcaaaaccttc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47350130 |
ccaaactggacccttatccttcatcatctcagccaaccttaaacgaggaccgtcctcgtatccatactcctcaatctcaaattgttccgtcaaaaccttc |
47350031 |
T |
|
| Q |
309 |
cacaattgtttccacctaaaaacatcacctttgct |
343 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
47350030 |
cacaattgtttccacctaaaaacatcaccattgct |
47349996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 125 - 337
Target Start/End: Original strand, 3818669 - 3818884
Alignment:
| Q |
125 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggaccctta |
224 |
Q |
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| T |
3818669 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgttacctgcaacccattctccttcacaatctcatcccaaacaggaccctta |
3818768 |
T |
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| Q |
225 |
tccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttcc |
321 |
Q |
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| T |
3818769 |
tccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcccaaattgttccgcgataaccttccacaattgcttcc |
3818868 |
T |
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| Q |
322 |
acctaaaaacatcacc |
337 |
Q |
| |
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|||||||||||||||| |
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| T |
3818869 |
acctaaaaacatcacc |
3818884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 125 - 337
Target Start/End: Complemental strand, 47339208 - 47338993
Alignment:
| Q |
125 |
tccaaaagtagcatccgcaacccaccactcagcaacttcttccaacttcgtaggttgaagctcgttctccttcacaatctcatcccaaactggaccctta |
224 |
Q |
| |
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||||||| |||||| |||| ||||||||||||||||||||||| |||||| || | | | |||||||||||||||||||||||||| ||||||||| |
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| T |
47339208 |
tccaaaacaagcatctgcaaaccaccactcagcaacttcttccagcttcgtcacctgcaacccattctccttcacaatctcatcccaaacaggaccctta |
47339109 |
T |
|
| Q |
225 |
tccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatctcaaattgttccgtcaaaaccttccacaattgtttcc |
321 |
Q |
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| T |
47339108 |
tccttcatcaactccgttaacttcaaacgaggaccttcctcgtcgaacccatactcctcaatcccaaattgttccgcgataaccttccacaattgcttcc |
47339009 |
T |
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| Q |
322 |
acctaaaaacatcacc |
337 |
Q |
| |
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|||||||||||||||| |
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| T |
47339008 |
acctaaaaacatcacc |
47338993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 47350686 - 47350604
Alignment:
| Q |
18 |
atgatggctcttgaagaaaccactctcttccaacattgttttagttgaaggtcacagtttgttcattttttaacgtcccatta |
100 |
Q |
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| T |
47350686 |
atgatggctcttgaagaaaccactctcttccaacattgttttagttgaaggtcacagtttgttcattttttaacgtcccatta |
47350604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 189 - 343
Target Start/End: Complemental strand, 47347614 - 47347457
Alignment:
| Q |
189 |
ttctccttcacaatctcatcccaaactggacccttatccttcatcatctcagccaaccttaaacgaggacagtcctcgt---atgcatactcctcaatct |
285 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||| | |||||||||| ||||||| | |||||||||||||| |
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| T |
47347614 |
ttctccttcacaatctcatcccaaacaggacccttatccttcatcaactccgacaacttcaaacgaggaccttcctcgtcaaacccatactcctcaatcc |
47347515 |
T |
|
| Q |
286 |
caaattgttccgtcaaaaccttccacaattgtttccacctaaaaacatcacctttgct |
343 |
Q |
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|||| ||||||| |||||||||||| | ||||||||| |||||||||||||| ||||| |
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| T |
47347514 |
caaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgct |
47347457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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