View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10431_low_4 (Length: 248)

Name: NF10431_low_4
Description: NF10431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10431_low_4
NF10431_low_4
[»] chr4 (13 HSPs)
chr4 (1-178)||(42432680-42432857)
chr4 (1-120)||(49408412-49408531)
chr4 (1-134)||(49411145-49411278)
chr4 (1-112)||(45439448-45439559)
chr4 (37-112)||(42595354-42595429)
chr4 (1-122)||(15730868-15730989)
chr4 (2-102)||(46074889-46074989)
chr4 (1-56)||(52833407-52833462)
chr4 (37-114)||(5486566-5486643)
chr4 (37-114)||(29284864-29284941)
chr4 (37-114)||(44820741-44820818)
chr4 (42-116)||(398834-398908)
chr4 (85-114)||(221246-221275)
[»] chr7 (13 HSPs)
chr7 (1-116)||(19248796-19248911)
chr7 (1-122)||(30603738-30603859)
chr7 (1-116)||(16671122-16671237)
chr7 (1-116)||(17645490-17645605)
chr7 (43-122)||(23406249-23406328)
chr7 (10-122)||(7845958-7846060)
chr7 (10-122)||(7844588-7844694)
chr7 (85-118)||(2619712-2619745)
chr7 (37-114)||(31589908-31589985)
chr7 (37-114)||(35445339-35445416)
chr7 (30-112)||(21859140-21859222)
chr7 (85-114)||(2455652-2455681)
chr7 (40-112)||(778486-778558)
[»] chr3 (14 HSPs)
chr3 (10-116)||(5104436-5104542)
chr3 (21-122)||(37827333-37827434)
chr3 (1-116)||(17612650-17612765)
chr3 (21-112)||(5552058-5552149)
chr3 (10-95)||(52327361-52327446)
chr3 (1-82)||(24987817-24987898)
chr3 (72-120)||(6419363-6419411)
chr3 (1-112)||(42153473-42153578)
chr3 (24-122)||(26897247-26897345)
chr3 (72-112)||(24987904-24987944)
chr3 (37-114)||(24735837-24735914)
chr3 (37-114)||(29839779-29839856)
chr3 (85-114)||(23217138-23217167)
chr3 (28-113)||(52689604-52689689)
[»] chr1 (7 HSPs)
chr1 (1-122)||(30539553-30539674)
chr1 (1-122)||(34288322-34288443)
chr1 (23-108)||(44343937-44344022)
chr1 (1-58)||(40874301-40874358)
chr1 (1-101)||(23298033-23298133)
chr1 (37-114)||(29267913-29267990)
chr1 (85-113)||(12417043-12417071)
[»] chr5 (7 HSPs)
chr5 (1-111)||(9597585-9597695)
chr5 (1-116)||(35796892-35797007)
chr5 (39-114)||(42885268-42885343)
chr5 (85-114)||(1864608-1864637)
chr5 (10-67)||(22791866-22791923)
chr5 (78-114)||(1945078-1945114)
chr5 (85-113)||(16855861-16855889)
[»] chr8 (9 HSPs)
chr8 (1-116)||(1822524-1822638)
chr8 (1-116)||(1856969-1857083)
chr8 (1-116)||(5200182-5200297)
chr8 (12-122)||(16027673-16027783)
chr8 (1-122)||(8047690-8047811)
chr8 (1-122)||(22740628-22740748)
chr8 (72-122)||(23399185-23399235)
chr8 (10-115)||(24984288-24984393)
chr8 (30-114)||(33359425-33359509)
[»] chr6 (1 HSPs)
chr6 (1-122)||(685439-685560)
[»] chr2 (4 HSPs)
chr2 (10-113)||(39497379-39497482)
chr2 (48-122)||(25920910-25920984)
chr2 (37-114)||(15696814-15696891)
chr2 (85-113)||(4622523-4622551)
[»] scaffold0057 (1 HSPs)
scaffold0057 (30-114)||(49969-50053)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 42432680 - 42432857
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| |||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  42432680 ataaatgggtatttaattatctgttactttatggacatgaacacggatttgatgatactcatgcccgcaggtatccgtacccactaataaattaagtaaa 42432779  T
Q  101 ttactaaaatatccatatgtatgcgtgcgtgtatgagtttggtgtctaaaaaaccgtagtttatcatgtgtagtgtac 178  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  42432780 ttactaaaatatccatgtgtgtgcgtgcatgtatgagtttggtgtctaaaaaaccctagtttatcatgtgtactgtac 42432857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 49408531 - 49408412
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| ||||||| ||||||||||||||| |||||| |||| |||||||||||| || ||||||| | ||| ||||||| |||||||||||||||||    
T  49408531 ataaatgggtatttaactacccgttactttatagacacgaacacagatttgatgatattcgtgcccgcgggtatacgtacccgttaataaattaagtaaa 49408432  T
Q  101 ttactaaaatatccatatgt 120  Q
    |||||||||||| |||||||    
T  49408431 ttactaaaatatacatatgt 49408412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 49411278 - 49411145
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||| | ||||||||||||||||||||||||||||| ||||| |||||||||||| |  |||||   ||||||| ||||| | |||||||||||||||    
T  49411278 ataaattggtatttaattacccgttactttatggacacagacacagatttgatgatatttgtgcccagggatatccatacccgtaaataaattaagtaaa 49411179  T
Q  101 ttactaaaatatccatatgtatgcgtgcgtgtat 134  Q
    |||||||||||||||||||| || ||| ||||||    
T  49411178 ttactaaaatatccatatgtttgtgtgtgtgtat 49411145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45439448 - 45439559
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| ||||||| ||||||||  ||||||||||  |||||||||||||||||||   ||||| | | |||||||| || |||||||||||||||||    
T  45439448 ataaatgggtatttaactacccgtttttttatggacatagacacggatttgatgatacctgtgcccacgggtatccgtatccgttaataaattaagtaaa 45439547  T
Q  101 ttactaaaatat 112  Q
    ||||||||||||    
T  45439548 ttactaaaatat 45439559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 42595354 - 42595429
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatat 112  Q
    |||||||||||||||||| ||| | |||||||  ||||||||||||||||||||||||| ||||||||||||||||    
T  42595354 acggacacggatttgatgttacccgtgcccgcgtatatccgtacccattaataaattaaataaattactaaaatat 42595429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15730868 - 15730989
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || |||||||| | |||||| ||||||| |||  | |||||||||||||||  | ||| ||| | |||||||| || ||||||||||||||||     
T  15730868 ataaacgggtatttaatcatccgttattttatgggcacatatacggatttgatgatatccgtgctcgcgggtatccgtatccgttaataaattaagtaat 15730967  T
Q  101 ttactaaaatatccatatgtat 122  Q
    ||||||||||||| || |||||    
T  15730968 ttactaaaatatctatgtgtat 15730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 46074889 - 46074989
Alignment:
Q  2 taaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaat 101  Q
    ||||| ||||||||| || ||||||||||||||| ||  |||||||||| || |||||| | ||||| | ||||| ||| | ||||||||||||||||||    
T  46074889 taaattgatatttaactatccgttactttatggatacatacacggattttattatactcgtacccgcgggtatccatacgcgttaataaattaagtaaat 46074988  T
Q  102 t 102  Q
    |    
T  46074989 t 46074989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 52833407 - 52833462
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgat 56  Q
    ||||| || ||||||||||||||||||||| ||||||| | |||||||||||||||    
T  52833407 ataaacgggtatttaattacccgttactttttggacaccggcacggatttgatgat 52833462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 5486566 - 5486643
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  5486566 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 5486643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 29284864 - 29284941
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  29284864 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 29284941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 44820818 - 44820741
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  44820818 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 44820741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 398908 - 398834
Alignment:
Q  42 cacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatccat 116  Q
    ||||||||||||||||| | |  | || ||||| |||| || ||||||||||||||||| || ||||||||||||    
T  398908 cacggatttgatgatacccgtatctgcggatattcgtatccgttaataaattaagtaaactattaaaatatccat 398834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 221246 - 221275
Alignment:
Q  85 taataaattaagtaaattactaaaatatcc 114  Q
    ||||||||||||||||||||||||||||||    
T  221246 taataaattaagtaaattactaaaatatcc 221275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19248911 - 19248796
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||    || |||||| ||||| ||||| |||||||||||||||||    
T  19248911 ataaatgggtatttaactacccgttactttatggacacggatacggatttgatgatatcggtgtccgcaggtatccatacccgttaataaattaagtaaa 19248812  T
Q  101 ttactaaaatatccat 116  Q
    |||||||| |||||||    
T  19248811 ttactaaattatccat 19248796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30603738 - 30603859
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || |||||||  ||||||||||| ||||||||  | |||||||||||||||| | ||||||| | ||||||||||| ||||||||||| |||||    
T  30603738 ataaacgggtatttaacaacccgttacttcatggacacaaatacggatttgatgatacccgtgcccgctggtatccgtacccgttaataaattatgtaaa 30603837  T
Q  101 ttactaaaatatccatatgtat 122  Q
    |||||||||||||||| |||||    
T  30603838 ttactaaaatatccatgtgtat 30603859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 16671122 - 16671237
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| ||||| |||||| |||||||| |||||||||||||||||||   ||||||| | ||||||||||||| |||| |||||| |||    
T  16671122 ataaacgggtatttaactacccattacttaatggacactgacacggatttgatgatacctgtgcccgcgggtatccgtacccatcaatatattaagcaaa 16671221  T
Q  101 ttactaaaatatccat 116  Q
    ||||||||||| ||||    
T  16671222 ttactaaaatacccat 16671237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 17645490 - 17645605
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| ||||| |||||| |||||||| |||||||||||||||||||   ||||||| | ||||||||||||| |||| |||||| |||    
T  17645490 ataaacgggtatttaactacccattacttaatggacactgacacggatttgatgatacctgtgcccgcgggtatccgtacccatcaatatattaagcaaa 17645589  T
Q  101 ttactaaaatatccat 116  Q
    ||||||||||| ||||    
T  17645590 ttactaaaatacccat 17645605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 23406249 - 23406328
Alignment:
Q  43 acggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatccatatgtat 122  Q
    ||||||||||||||||   ||||||| | ||||||||||| ||||||||||||||||||||||||||||| ||| |||||    
T  23406249 acggatttgatgatacctgtgcccgcgggtatccgtacccgttaataaattaagtaaattactaaaatattcatgtgtat 23406328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 7846060 - 7845958
Alignment:
Q  10 tatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaa 109  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||||          |||| | ||||||||||  ||||||||||||||||||||||||||    
T  7846060 tatttaactacccgttattttatggacacagacacggatttgatg----------ccgcgggtatccgtacctgttaataaattaagtaaattactaaaa 7845971  T
Q  110 tatccatatgtat 122  Q
    ||||||| |||||    
T  7845970 tatccatgtgtat 7845958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 7844694 - 7844588
Alignment:
Q  10 tatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaa 109  Q
    ||||||| || |||||| |||||||| || ||||||||||||||||||| |   ||||| | |||||||      |||||||||||||||||||||||||    
T  7844694 tatttaactaaccgttattttatggagacagacacggatttgatgatacccgcacccgcgggtatccgt------taataaattaagtaaattactaaaa 7844601  T
Q  110 tatccatatgtat 122  Q
    ||||||| |||||    
T  7844600 tatccatgtgtat 7844588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 2619745 - 2619712
Alignment:
Q  85 taataaattaagtaaattactaaaatatccatat 118  Q
    ||||||||||||||||||||||||||||||||||    
T  2619745 taataaattaagtaaattactaaaatatccatat 2619712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 31589908 - 31589985
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  31589908 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 31589985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 35445416 - 35445339
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  35445416 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 35445339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 21859140 - 21859222
Alignment:
Q  30 tatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatat 112  Q
    |||||| |||||||||||||||||  ||   || ||| | | ||||| |||||  ||||||||||||||||||||||||||||    
T  21859140 tatggatacggacacggatttgattgtatcaatacccacgggtatccatacccgataataaattaagtaaattactaaaatat 21859222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 2455652 - 2455681
Alignment:
Q  85 taataaattaagtaaattactaaaatatcc 114  Q
    ||||||||||||||||||||||||||||||    
T  2455652 taataaattaagtaaattactaaaatatcc 2455681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 778486 - 778558
Alignment:
Q  40 gacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatat 112  Q
    ||||||||||||||  ||||||| | | | |||| || |||||  ||||||||||||||||| ||||||||||    
T  778486 gacacggatttgattgtactcatactcacggatacccatacccgataataaattaagtaaatgactaaaatat 778558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 5104542 - 5104436
Alignment:
Q  10 tatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaa 109  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||| | || |||||  |||  |||||| ||||||||||||||||||||||||||    
T  5104542 tatttaactacccgttactttatggacacgaacacggatttgatgatacccgtgtccgcatgtatttgtacccgttaataaattaagtaaattactaaaa 5104443  T
Q  110 tatccat 116  Q
    |||||||    
T  5104442 tatccat 5104436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 37827434 - 37827333
Alignment:
Q  21 ccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatccatatgt 120  Q
    |||||||||||||| |||||| |||||||||||||||| | ||||||| | ||||||||||| |||||||||||||||| ||||||||||||| || |||    
T  37827434 ccgttactttatgggcacggatacggatttgatgatacccgtgcccgcgggtatccgtacccgttaataaattaagtaatttactaaaatatctatgtgt 37827335  T
Q  121 at 122  Q
    ||    
T  37827334 at 37827333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 17612765 - 17612650
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||  ||||||| ||||| ||| ||||| |||||||| |||||||||||||||| | |||| || | ||||||||||| ||||||| | |||||||    
T  17612765 ataaatgagtatttaactacccattattttatagacacggatacggatttgatgatacccgtgcctgcgggtatccgtacccgttaataagtgaagtaaa 17612666  T
Q  101 ttactaaaatatccat 116  Q
    ||||||||||||||||    
T  17612665 ttactaaaatatccat 17612650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 5552149 - 5552058
Alignment:
Q  21 ccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatat 112  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||   ||||  ||||  |||||||||||| ||||||||||||||||    
T  5552149 ccgttactttatggatacagacacggatttgatgatactcgtgcccgcgagtatcaatacctgttaataaattaaataaattactaaaatat 5552058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 52327361 - 52327446
Alignment:
Q  10 tatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaa 95  Q
    ||||||| || ||||||||||||||  | ||| |||||||||||||||||| |||||| || ||||||||||| ||||||||||||    
T  52327361 tatttaactatccgttactttatggggatggatacggatttgatgatactcgtgcccgaaggtatccgtacccgttaataaattaa 52327446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 24987817 - 24987898
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtaccc 82  Q
    ||||| || ||||||| |||||||||||||||||||||| |||||||||||||||||| | | ||||  | |||||||||||    
T  24987817 ataaacgggtatttaactacccgttactttatggacacgaacacggatttgatgatacccgtacccgtgggtatccgtaccc 24987898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 6419411 - 6419363
Alignment:
Q  72 tatccgtacccattaataaattaagtaaattactaaaatatccatatgt 120  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  6419411 tatccgtatccaataataaattaagtaaattactaaaatatccatatgt 6419363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 42153578 - 42153473
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| ||||||||||| |||||||||||| |||||||      ||||||| |||   | ||||| ||||||||||| | |||||||||||| ||||    
T  42153578 ataaatgggtatttaattactcgttactttatgaacacgga------tttgatggtacctgtacccgcggatatccgtactcgttaataaattaattaaa 42153485  T
Q  101 ttactaaaatat 112  Q
    ||||||||||||    
T  42153484 ttactaaaatat 42153473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 26897247 - 26897345
Alignment:
Q  24 ttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatccatatgtat 122  Q
    ||||||||||||||| |||||  ||||||||||| |  |||   | | ||||| ||| ||||||||||||||||||||||||||||||| ||| |||||    
T  26897247 ttactttatggacactgacacatatttgatgataattgtgctaacgggtatccatactcattaataaattaagtaaattactaaaatattcatgtgtat 26897345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 24987904 - 24987944
Alignment:
Q  72 tatccgtacccattaataaattaagtaaattactaaaatat 112  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  24987904 tatccgtacccattaataaattaaataaattactaaaatat 24987944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 24735914 - 24735837
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  24735914 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 24735837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 29839856 - 29839779
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  29839856 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 29839779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Complemental strand, 23217167 - 23217138
Alignment:
Q  85 taataaattaagtaaattactaaaatatcc 114  Q
    ||||||||||||||||||||||||||||||    
T  23217167 taataaattaagtaaattactaaaatatcc 23217138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 52689689 - 52689604
Alignment:
Q  28 tttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatc 113  Q
    |||||||| | |||||| ||||||||||||||  ||||| ||| |  || || |   |||||||||||||||||||||||||||||    
T  52689689 tttatggatatggacacagatttgatgatacttgtgcccacaggtgcccatatctgataataaattaagtaaattactaaaatatc 52689604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 30539553 - 30539674
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||| | | ||||||||| ||||||||||| |||||    
T  30539553 ataaacgggtatttaactatccgttactttatggacacggacacagatttgatgatacacgtgcccgcgggtctccgtacccgttaataaattatgtaaa 30539652  T
Q  101 ttactaaaatatccatatgtat 122  Q
    ||| |||||||| |||||||||    
T  30539653 ttattaaaatattcatatgtat 30539674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 34288322 - 34288443
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||  |||| |||||||||||||||||||||| ||||||||||||    ||||||| | ||||| ||||| ||||||| |||||||||    
T  34288322 ataaacgggtatttagctacctgttactttatggacacggacacagatttgatgatatctgtgcccgcgggtatccatacccgttaataatttaagtaaa 34288421  T
Q  101 ttactaaaatatccatatgtat 122  Q
    |||||||||||||||| |||||    
T  34288422 ttactaaaatatccatgtgtat 34288443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 44343937 - 44344022
Alignment:
Q  23 gttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaa 108  Q
    |||||||||||| || ||| ||||||||||||||||   ||||||||| |||||||||||  ||||||||||||||| ||||||||    
T  44343937 gttactttatgggcatggatacggatttgatgatacctgtgcccgcaggtatccgtacccgataataaattaagtaatttactaaa 44344022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 40874301 - 40874358
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatac 58  Q
    ||||| || ||||||| || ||||||| ||||||||||||||||||||||||||||||    
T  40874301 ataaaagggtatttaactatccgttacgttatggacacggacacggatttgatgatac 40874358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 23298133 - 23298033
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| ||||||| || || ||  |||||||| || |||||  |||||||||||||| ||||||||  ||||| |||||  ||||||||||||||||    
T  23298133 ataaatgggtatttaactatccatttttttatggatacagacacaaatttgatgatactcgtgcccgcatgtatccatacccgataataaattaagtaaa 23298034  T
Q  101 t 101  Q
    |    
T  23298033 t 23298033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 29267913 - 29267990
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  29267913 acggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 29267990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 12417043 - 12417071
Alignment:
Q  85 taataaattaagtaaattactaaaatatc 113  Q
    |||||||||||||||||||||||||||||    
T  12417043 taataaattaagtaaattactaaaatatc 12417071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 9597585 - 9597695
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| ||||||| || |||||||||||||||||| ||||||||||| ||||||||| |||||||   |||||||||   |||||||||||||||||    
T  9597585 ataaatgggtatttaactatccgttactttatggacacagacacggatttaatgatactcgtgcccgcgagtatccgtacattttaataaattaagtaaa 9597684  T
Q  101 ttactaaaata 111  Q
    ||| |||||||    
T  9597685 ttattaaaata 9597695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 35797007 - 35796892
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| |||| |||||||||||||||| |||||  ||||||||||||   || ||||  |||||||||| | |||||||||||||||||    
T  35797007 ataaacgggtatttaactaccggttactttatggacacagacacatatttgatgatacatgtgtccgcgtatatccgtactcgttaataaattaagtaaa 35796908  T
Q  101 ttactaaaatatccat 116  Q
    ||||||||||||||||    
T  35796907 ttactaaaatatccat 35796892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 42885268 - 42885343
Alignment:
Q  39 ggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||| ||| ||| ||| | | || || |||||| ||||||||||| | ||||||||||||||||    
T  42885268 ggacacggatttgatggtacccatacccacgggtacccatacccaataataaattaacttaattactaaaatatcc 42885343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 114
Target Start/End: Original strand, 1864608 - 1864637
Alignment:
Q  85 taataaattaagtaaattactaaaatatcc 114  Q
    ||||||||||||||||||||||||||||||    
T  1864608 taataaattaagtaaattactaaaatatcc 1864637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 22791866 - 22791923
Alignment:
Q  10 tatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccg 67  Q
    ||||||| |||||||| ||||| ||||||| ||| |||||||||||||| ||| ||||    
T  22791866 tatttaaatacccgttgctttacggacacgaacatggatttgatgatacccatacccg 22791923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 1945078 - 1945114
Alignment:
Q  78 tacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||| |||||||||||||| |||||||||||||||    
T  1945078 tacccaataataaattaagtatattactaaaatatcc 1945114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 16855889 - 16855861
Alignment:
Q  85 taataaattaagtaaattactaaaatatc 113  Q
    |||||||||||||||||||||||||||||    
T  16855889 taataaattaagtaaattactaaaatatc 16855861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1822524 - 1822638
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||| | | ||||| | ||||||||||| |||||| ||||||||||    
T  1822524 ataaacgggtatttaactatccgttacttaatggacacagacacggatttgatgatacccgttcccgc-ggtatccgtacccgttaatatattaagtaaa 1822622  T
Q  101 ttactaaaatatccat 116  Q
    ||||||||||| ||||    
T  1822623 ttactaaaatacccat 1822638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1856969 - 1857083
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| || ||||||||| |||||||| ||||||||||||||||||| | | ||||| | ||||||||||| |||||| ||||||||||    
T  1856969 ataaacgggtatttaactatccgttacttaatggacacagacacggatttgatgatacccgttcccgc-ggtatccgtacccgttaatatattaagtaaa 1857067  T
Q  101 ttactaaaatatccat 116  Q
    ||||||||||| ||||    
T  1857068 ttactaaaatacccat 1857083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 5200297 - 5200182
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| |||| ||||||| |||||||||| |||  |||||||||||||| ||   ||  |||||||||||| |||||||||||||||||    
T  5200297 ataaacgggtatttaactacctgttacttcatggacacgggcacaaatttgatgatactcgtgtatgcgaatatccgtacccgttaataaattaagtaaa 5200198  T
Q  101 ttactaaaatatccat 116  Q
    ||||||||||||||||    
T  5200197 ttactaaaatatccat 5200182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 16027673 - 16027783
Alignment:
Q  12 tttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaata 111  Q
    ||||||||||||||| |||||| ||||| | || | |||||||||| |||||| ||| | |||| |||||| ||||||||| ||||||||||||||||||    
T  16027673 tttaattacccgttattttatgaacacgaatacaggtttgatgatattcatgctcgcgggtatctgtacccgttaataaatcaagtaaattactaaaata 16027772  T
Q  112 tccatatgtat 122  Q
    ||||| |||||    
T  16027773 tccatgtgtat 16027783  T

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Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 8047811 - 8047690
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| || ||||||||||||||||| ||||| |||||||||||||| | || |||| | |||||||| |  |||||||||||| ||||    
T  8047811 ataaacgggtatttaactatccgttactttatggacatggacatggatttgatgatacccgtgtccgcgggtatccgtatctgttaataaattaaataaa 8047712  T
Q  101 ttactaaaatatccatatgtat 122  Q
    ||| |||||||| ||| |||||    
T  8047711 ttattaaaatattcatgtgtat 8047690  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 22740628 - 22740748
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    ||||| || ||||||| || ||||||||||||||||| || ||| ||||||||||||| | || | || | ||| ||||| |||||||||||||||||||    
T  22740628 ataaacgggtatttaactatccgttactttatggacatgggcacagatttgatgatacccgtgtctgcgggtattcgtactcattaataaattaagtaaa 22740727  T
Q  101 ttactaaaatatccatatgtat 122  Q
    ||||| |||||||||| |||||    
T  22740728 ttact-aaatatccatgtgtat 22740748  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 23399235 - 23399185
Alignment:
Q  72 tatccgtacccattaataaattaagtaaattactaaaatatccatatgtat 122  Q
    ||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  23399235 tatccgtactcgttaataaattaagtaaattactaaaatatccatgtgtat 23399185  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 24984393 - 24984288
Alignment:
Q  10 tatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaa 109  Q
    ||||||| ||||||||| ||||||||  |||||| | |||||||||||||  ||||||  | ||||| ||||| ||||||||||||  |||| ||||||     
T  24984393 tatttaactacccgttattttatggatccggacatgaatttgatgatacttgtgcccgtgggtatccatacccgttaataaattaaaaaaatgactaaat 24984294  T
Q  110 tatcca 115  Q
    ||||||    
T  24984293 tatcca 24984288  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 33359509 - 33359425
Alignment:
Q  30 tatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||| |||| |||||||||||| |||  ||| ||| | |||| || ||||   ||||| ||||||||||||||||||||||||    
T  33359509 tatggatacgggcacggatttgattatatccatacccacggatacccatacctgataatatattaagtaaattactaaaatatcc 33359425  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 685439 - 685560
Alignment:
Q  1 ataaatggatatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaa 100  Q
    |||||||| ||||||| ||||  |||||||||||||||||| || ||||||| ||||||| || |||  | ||| ||||||| |||||||||||||||||    
T  685439 ataaatgggtatttaactacctattactttatggacacggatacagatttgacgatactcgtgtccgtgggtatgcgtacccgttaataaattaagtaaa 685538  T
Q  101 ttactaaaatatccatatgtat 122  Q
    |||  ||||||||||| |||||    
T  685539 ttataaaaatatccatgtgtat 685560  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 39497379 - 39497482
Alignment:
Q  10 tatttaattacccgttactttatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaa 109  Q
    ||||||| || |||||||||||||| || ||| |||||||||||||||| | ||||||| | ||||| ||||| ||||||||| |||||| |||||||||    
T  39497379 tatttaactatccgttactttatgggcatggatacggatttgatgatacccgtgcccgcgggtatccatacccgttaataaatcaagtaatttactaaaa 39497478  T
Q  110 tatc 113  Q
    ||||    
T  39497479 tatc 39497482  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 25920984 - 25920910
Alignment:
Q  48 tttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatccatatgtat 122  Q
    ||||||||||| | ||||||| | ||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  25920984 tttgatgatacccgtgcccgcgggtattcgtacccgttaataaattaagtaaattactaaaatatccatgtgtat 25920910  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 15696891 - 15696814
Alignment:
Q  37 acggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||||||||||||||| ||  ||| ||| | |||| || |||||| ||||||||||| | ||||||||||||||||    
T  15696891 acggacacggatttgatggtatccatacccacggatacccatacccaataataaattaacttaattactaaaatatcc 15696814  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 4622523 - 4622551
Alignment:
Q  85 taataaattaagtaaattactaaaatatc 113  Q
    |||||||||||||||||||||||||||||    
T  4622523 taataaattaagtaaattactaaaatatc 4622551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 50053 - 49969
Alignment:
Q  30 tatggacacggacacggatttgatgatactcatgcccgcagatatccgtacccattaataaattaagtaaattactaaaatatcc 114  Q
    |||||| ||||||||||||||||| |||  ||| ||| | | ||  | |||||  ||||||||||||||||||||||||||||||    
T  50053 tatggatacggacacggatttgattataaccatacccacgggtactcatacccgataataaattaagtaaattactaaaatatcc 49969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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