View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10432_high_12 (Length: 226)
Name: NF10432_high_12
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10432_high_12 |
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| [»] scaffold0238 (2 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 13121 - 12999
Alignment:
| Q |
6 |
agaagcaaaggagaggcgtggagctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatctttt |
105 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13121 |
agaagcaaatgagaggcgtggagttgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatctttt |
13022 |
T |
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| Q |
106 |
cctctttggttgtcaaacagagg |
128 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
13021 |
cctctttggttgtcaaacagagg |
12999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 12931 - 12901
Alignment:
| Q |
196 |
tagtgattgacatgaacagaaaagtgcacac |
226 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12931 |
tagtgattgacatgaacagaaaagtgcacac |
12901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 10453285 - 10453163
Alignment:
| Q |
6 |
agaagcaaaggagaggcgtggagctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatctttt |
105 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10453285 |
agaagcaaatgagaggcgtggagctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaactgagcatggcacacattaatctttt |
10453186 |
T |
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| Q |
106 |
cctctttggttgtcaaacagagg |
128 |
Q |
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||||||||||||||||||||||| |
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| T |
10453185 |
cctctttggttgtcaaacagagg |
10453163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Complemental strand, 10453093 - 10453063
Alignment:
| Q |
196 |
tagtgattgacatgaacagaaaagtgcacac |
226 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10453093 |
tagtgattgacatgaacagaaaagtgcacac |
10453063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 12603819 - 12603941
Alignment:
| Q |
6 |
agaagcaaaggagaggcgtggagctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatctttt |
105 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12603819 |
agaagcaaatgagaggcgtggagttgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatctttt |
12603918 |
T |
|
| Q |
106 |
cctctttggttgtcaaacagagg |
128 |
Q |
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||||||||||||||||||||||| |
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| T |
12603919 |
cctctttggttgtcaaacagagg |
12603941 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 122
Target Start/End: Complemental strand, 23261814 - 23261698
Alignment:
| Q |
6 |
agaagcaaaggagaggcgtggagctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatctttt |
105 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| | |||||||||||| |||||||||| |
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| T |
23261814 |
agaagcaaatgagaagcgtggagctgaagaagatatgtgggaaaattatttacttataaaatgaacaaaatcaattgagcatggcacacgttaatctttt |
23261715 |
T |
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| Q |
106 |
cctctttggttgtcaaa |
122 |
Q |
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|| ||| |||||||||| |
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| T |
23261714 |
ccacttcggttgtcaaa |
23261698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 12604011 - 12604041
Alignment:
| Q |
196 |
tagtgattgacatgaacagaaaagtgcacac |
226 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
12604011 |
tagtgattgacatgaacagaaaagtgcacac |
12604041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 56478133 - 56478249
Alignment:
| Q |
6 |
agaagcaaaggagaggcgtggagctgaagaagatatgtgggaaaatgatttactaagaaaatgaagaaaatcaacttagcatggcacacattaatctttt |
105 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| | |||||||||||| |||||||||| |
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| T |
56478133 |
agaagcaaatgagaagcgtggagctgaagaagatatgtgggaaaataatttacttaaaaaatgaacaaaatcaattgagcatggcacacgttaatctttt |
56478232 |
T |
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| Q |
106 |
cctctttggttgtcaaa |
122 |
Q |
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|| ||| |||||||||| |
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| T |
56478233 |
ccacttcggttgtcaaa |
56478249 |
T |
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