View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10432_high_3 (Length: 318)
Name: NF10432_high_3
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10432_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 11828248 - 11828363
Alignment:
| Q |
7 |
ctaaggacgtgtttggattgtacgtagtcaatagaagaattcctattaataatatcgcggctaccgcgggttttcgaagtgtgttccatattgtggttgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11828248 |
ctaaggacgtgtttggattgtacgtagtcaatagaagaattcctattaataatatcgcggctaccgcgggttttcgaagtgtgttccatattgtggttgc |
11828347 |
T |
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| Q |
107 |
gagagattctaatagg |
122 |
Q |
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|||||||||||||||| |
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| T |
11828348 |
gagagattctaatagg |
11828363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 23097458 - 23097570
Alignment:
| Q |
7 |
ctaaggacgtgtttggattgtacgtagtcaatagaagaattcctattaataatatcgcggctaccgcgggttttcgaagtgtgttccatattgtggttgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23097458 |
ctaaggacgtgtttggattgtacgtagtcaatagaa---ttcctattaataatatcgcggctaccacgggttttcgaagtgtgttccatattgtggttgc |
23097554 |
T |
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| Q |
107 |
gagagattctaatagg |
122 |
Q |
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||||||||||||||| |
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| T |
23097555 |
cagagattctaatagg |
23097570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 11828419 - 11828526
Alignment:
| Q |
196 |
tggcggcgttattgtgtgattttatgttgttgggtattgatattgaagttctgaaggtgtgagtgcgaggaaaagagaattgcttcttccacttcaaatg |
295 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11828419 |
tggcggcgttattgtgtgattttatgtt---gggtattgatattgaagttctgaaggtgtgagtgcgaggaaaagagaattgcttcttccacttcaaatg |
11828515 |
T |
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| Q |
296 |
gagggcacagg |
306 |
Q |
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|| || ||||| |
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| T |
11828516 |
gaaggtacagg |
11828526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 196 - 297
Target Start/End: Original strand, 23097638 - 23097739
Alignment:
| Q |
196 |
tggcggcgttattgtgtgattttatgttgttgggtattgatattgaagttctgaaggtgtgagtgcgaggaaaagagaattgcttcttccacttcaaatg |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
23097638 |
tggcggcgttattgtgtgattttatgttgttgggtattgatattgaagttgttaaggtgtgagtgcgaggaaaatagaattgcttcttccatttcaaatg |
23097737 |
T |
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| Q |
296 |
ga |
297 |
Q |
| |
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|| |
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| T |
23097738 |
ga |
23097739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 306
Target Start/End: Complemental strand, 47343838 - 47343738
Alignment:
| Q |
203 |
gttattgtgtgattttatgttgttgggtattgatattgaagttctgaaggtgtgagtgcgaggaaaagagaattgcttcttccacttcaaatggagggca |
302 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||| |||||||||| || | |
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| T |
47343838 |
gttattgtgtgactttatgttg---ggtattgatattgaagttatgaaggtgtgtgtgcgaggaaaagagaattggttgttccatttcaaatggaaggga |
47343742 |
T |
|
| Q |
303 |
cagg |
306 |
Q |
| |
|
|||| |
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|
| T |
47343741 |
cagg |
47343738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 47344034 - 47343929
Alignment:
| Q |
7 |
ctaaggacgtgtttggattgtacgtagtcaatagaagaattcctattaataatatcgcggctaccgcgggttttcgaagtgtgttccatattgtggttgc |
106 |
Q |
| |
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||||||||||||||||||||||| | |||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
47344034 |
ctaaggacgtgtttggattgtacat---caatagaa---ttcctatt---aatatcgcggcaaacgcgggttttcgaagtgtgttccatattgtggttgc |
47343944 |
T |
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| Q |
107 |
gagagattctaatag |
121 |
Q |
| |
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||| ||||||||||| |
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| T |
47343943 |
gagggattctaatag |
47343929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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