View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10432_low_13 (Length: 248)
Name: NF10432_low_13
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10432_low_13 |
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| [»] scaffold0899 (1 HSPs) |
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| [»] scaffold1230 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5278483 - 5278242
Alignment:
| Q |
1 |
cttagcagtcaaaacccaggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtgg |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5278483 |
cttagcagtcaaaatccaggagttatcactgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtgg |
5278384 |
T |
|
| Q |
101 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgactgtttactctaaattgatagttgtc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5278383 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgactgtttactctaaattgataggtgtc |
5278284 |
T |
|
| Q |
201 |
tttaggttttgaatcaccttgtgcaagcaaccctctctgctt |
242 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5278283 |
tttaggtttcgaatcaccttgtgcaagcaaccctctctgctt |
5278242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 5286464 - 5286289
Alignment:
| Q |
1 |
cttagcagtcaaaacccaggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtgg |
100 |
Q |
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|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5286464 |
cttagcagtcaaaatccaggagttatcactgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtgg |
5286365 |
T |
|
| Q |
101 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgact |
176 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |
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| T |
5286364 |
ataagagcataattgattatcttcaaaagcagtcttggtatgacaacaactagtttgagaacatgattagttgact |
5286289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 5282613 - 5282778
Alignment:
| Q |
1 |
cttagcagtcaaaacccaggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
5282613 |
cttagcagtcaaaacccaggagttatcactgtagcaaatgctttgtttaaatcgaatccgcttatttccgacgaagttcttaccaaagcatttcaagtgg |
5282712 |
T |
|
| Q |
101 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatga |
166 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
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| T |
5282713 |
ataagagcataattgattatcttcaaaagcagtcttggtacgacaacaactagttggagaacatga |
5282778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 20354005 - 20354242
Alignment:
| Q |
1 |
cttagcagtcaaaacccaggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtgg |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20354005 |
cttagcagtcaaaatccaggagtaatcactgttgcaaacgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaagtgg |
20354104 |
T |
|
| Q |
101 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgactgtttactctaaattgatagttgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || | ||||||||| ||| |||| ||| |
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| T |
20354105 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagttggagaacatgattattccatggtttactctgaatggataattgaa |
20354204 |
T |
|
| Q |
201 |
tttaggttttgaatcaccttgtgcaagcaaccctctct |
238 |
Q |
| |
|
||| | | || ||||||||||||||| ||||||||||| |
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| T |
20354205 |
tttcgttcttcaatcaccttgtgcaatcaaccctctct |
20354242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 20357850 - 20357675
Alignment:
| Q |
1 |
cttagcagtcaaaacccaggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtgg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20357850 |
cttagcagtcaaaatccaggagttatcaccgttgcaaatgctttgtttaaatcagatcctcttatttccgacgaagttcttaccaaagcttttcaagtgg |
20357751 |
T |
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| Q |
101 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgatcagtcgact |
176 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| |
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| T |
20357750 |
ataagagcataattgattatcttcaaaagcagtcttggtatgacaacaactagttagagaacatgattagttgact |
20357675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 6235436 - 6235270
Alignment:
| Q |
1 |
cttagcagtcaaaacccaggagttatcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
6235436 |
cttagcagtcaaaacccaggagttatcaccgttgcaaatgctttgtttaaatctaatccgcttatttccgacgaagttcttaccaaagcttttcaagtgg |
6235337 |
T |
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| Q |
101 |
ataagagcataattgattatcttcaaaaacagtcttggtatgacaacaactagtcggagaacatgat |
167 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||| |
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|
| T |
6235336 |
ataagagcataattgattatcttcaaaagcagtcttggtatgacaacaactagttgaagaacatgat |
6235270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0899 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0899
Description:
Target: scaffold0899; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 3145 - 3265
Alignment:
| Q |
33 |
tgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgattatcttcaaaaacag |
132 |
Q |
| |
|
|||||||||||| |||||||| |||| | |||||| || ||||||||||||||||||||| ||| || ||||||||||||||||||||| ||| ||| |
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| T |
3145 |
tgcaaatgcttttcttaaatctaatccgcctatttctgaaaaagttcttaccaaagcttttcgagtgcattagagcataattgattatcttc-aaagcag |
3243 |
T |
|
| Q |
133 |
tcttggtatgacaacaactagt |
154 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
3244 |
tcttggtatgacaataactagt |
3265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1230 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1230
Description:
Target: scaffold1230; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 1259 - 1140
Alignment:
| Q |
32 |
ttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttcaggtggataagagcataattgattatcttcaaaaaca |
131 |
Q |
| |
|
||||||||||||||||||||||| || | ||||| | ||||||||| ||||| ||||| || || | |||||||||||||||||| |||| || |
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| T |
1259 |
ttgcaaatgctttgtttaaatctacgccgcctatttttcagaaagttcttagcaaagtttttcgagtagactaaagcataattgattatctttaaaagca |
1160 |
T |
|
| Q |
132 |
gtcttggtatgacaacaact |
151 |
Q |
| |
|
|||||| |||||||| |||| |
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|
| T |
1159 |
gtcttgatatgacaataact |
1140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 14437443 - 14437512
Alignment:
| Q |
26 |
tcactgttgcaaatgctttgtttaaatctgatcctcttatttccgacgaagttcttaccaaagcttttca |
95 |
Q |
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|
||||| ||||||||||||||||||||||| || | | |||||| || |||||||||| || |||||||| |
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|
| T |
14437443 |
tcactattgcaaatgctttgtttaaatctaatacacctatttctgaaaaagttcttacgaatgcttttca |
14437512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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