View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10432_low_2 (Length: 506)
Name: NF10432_low_2
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10432_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 276
Target Start/End: Complemental strand, 4364094 - 4363830
Alignment:
| Q |
15 |
cacaacgtgcaattgcattgatctttgatgttaaggaaaactgaagataaatgaggttgatgcgacacaattgtgat-gttgtgatgtggtcagtggtct |
113 |
Q |
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| T |
4364094 |
cacaacgtgcaatttcatcgatctttgatgttaaggaaaactgaagaaaaatgaggttgatgcgacacaattgtgattgttgtgatgtggtcagtggtct |
4363995 |
T |
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| Q |
114 |
caaaatccttgatattgaggctacaattgaagtcgaggattacaatttaaaac-ttggtcatctgataaggatacatatatctgcaatggacaatggttc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363994 |
caaaatccttgatattgaggctacaattgaagtcgaggattacaatttaaaactttggtcatctgataaggatacatatatctgcaatggacaatggttc |
4363895 |
T |
|
| Q |
213 |
tttcccttcaatg-ttaggaggttttaagacaaatttacttcaggtaatgataaaatatcaaata |
276 |
Q |
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| T |
4363894 |
tttcccttcaatgtttaggaggttttaagacaattttacttcaggtaatgataaaatatcaaata |
4363830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 273 - 492
Target Start/End: Complemental strand, 4363732 - 4363512
Alignment:
| Q |
273 |
aatatgtgcggcaagcaagaagctcatatcctcaacatcaagggaacagggtctctcttaaaaagttctggaaccaacaacaagaaagggaaatctccta |
372 |
Q |
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| T |
4363732 |
aatatgtgcagcaagcaagaagctcatatcctcaacatcaagggaacagggtctctcttaaaaagttctggaaccaacaacaagaaagggaaatctccta |
4363633 |
T |
|
| Q |
373 |
caccagccagcaaaaccaaattccaccaatcataaatagaaaggaaaagaatgacaattctc-atgcaagcatgctgccacaccaatgaaaaagatgcat |
471 |
Q |
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| T |
4363632 |
caccagccagcaaaaccaaatcacaccaatcataaatagaaaggaaaagaatgacaattctcaatgcaagcatcctgccacaccaatgaaaaagatgcat |
4363533 |
T |
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| Q |
472 |
gctaaacaaaatagttctttc |
492 |
Q |
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| T |
4363532 |
gctaaacaaaatagttctttc |
4363512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 279 - 492
Target Start/End: Complemental strand, 4347299 - 4347086
Alignment:
| Q |
279 |
tgcggcaagcaagaagctcatatcctcaacatcaagggaacagggtctctcttaaaaagttctggaaccaacaacaagaaagggaaatctcctacaccag |
378 |
Q |
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| T |
4347299 |
tgcggcaagcaagaagccaatatcctcaacatcaagggaacagg-tctctcttaaacagttctggaacaaactacaagaaagagaaatctcctacactag |
4347201 |
T |
|
| Q |
379 |
ccagcaaaaccaaattccaccaatcataaatagaaaggaaaagaatgacaattctc-atgcaagcatgctgccacaccaatgaaaaagatgcatgctaaa |
477 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||| ||| |||| |||| |||||||||||||||||| |
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| T |
4347200 |
ccagcaaaaccaaattccacaaatcaaaaatagaaaggaaaagaatgacaattctcaatgcgagcatcctgacacaacaataaaaaagatgcatgctaaa |
4347101 |
T |
|
| Q |
478 |
caaaatagttctttc |
492 |
Q |
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| T |
4347100 |
caaaatagttctttc |
4347086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 277 - 490
Target Start/End: Complemental strand, 4338206 - 4337992
Alignment:
| Q |
277 |
tgtgcggcaagcaagaagctcatatcctcaacatcaagggaacagggtct-ctcttaaaaagttctggaaccaacaacaagaaagggaaatctcctacac |
375 |
Q |
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|||||||||||| ||| ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||| || ||||||||| |||| | ||| |
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| T |
4338206 |
tgtgcggcaagccagatgctcataccctcaacatcaagggaaca-ggtctcctcttaaacagttctggaacctaccacaagaaagagaaaccctctatgt |
4338108 |
T |
|
| Q |
376 |
cagccagcaaaaccaaattccaccaatcataaatagaaaggaaaagaatgacaattctc-atgcaagcatgctgccacaccaatgaaaaagatgcatgct |
474 |
Q |
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|||| ||| |||||| || ||||||||| || ||||||| ||||||||| |||||||| |||| ||||| || |||||| || ||||| ||||||| | |
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| T |
4338107 |
cagcaagcggaaccaattttcaccaatcaaaattagaaagaaaaagaatggcaattctcgatgcgagcatcatggcacaccgataaaaaatatgcatgtt |
4338008 |
T |
|
| Q |
475 |
aaacaaaatagttctt |
490 |
Q |
| |
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| T |
4338007 |
aaacaaaataattctt |
4337992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 380 - 435
Target Start/End: Original strand, 4131531 - 4131586
Alignment:
| Q |
380 |
cagcaaaaccaaattccaccaatcataaatagaaaggaaaagaatgacaattctca |
435 |
Q |
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| T |
4131531 |
cagcaaaaccaaattccaccaatcaaaaatagaaaggaaaagaatgacaattctca |
4131586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 444
Target Start/End: Original strand, 4121654 - 4121744
Alignment:
| Q |
355 |
agaaagggaaatctcctacaccagccagcaaaaccaaattccaccaatcataaatagaaaggaaaagaatgacaattctc-atgcaagcat |
444 |
Q |
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|||||| ||||||||||||| ||||| |||||||||| ||||| |||| ||||||||| ||||||||||||||||||| |||||||||| |
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| T |
4121654 |
agaaagagaaatctcctacattagccaacaaaaccaaaatccacaaatctaaaatagaaatgaaaagaatgacaattctcaatgcaagcat |
4121744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 484
Target Start/End: Original strand, 4118671 - 4118801
Alignment:
| Q |
355 |
agaaagggaaatctcctacaccagccagcaaaaccaaattccaccaatcataaatagaaaggaaaagaatgacaattc-tcatgcaagcatgctgccaca |
453 |
Q |
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|||||| |||||||||||||| ||| |||||| |||||||| ||| | ||||||||||||||||| |||||| || | |||||||||| || |||| |
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| T |
4118671 |
agaaagagaaatctcctacactgcccaacaaaactaaattccataaataaaaaatagaaaggaaaagagtgacaaatcttaatgcaagcatcttggcaca |
4118770 |
T |
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| Q |
454 |
ccaatgaaaaagatgcatgctaaacaaaata |
484 |
Q |
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|||| ||||| |||||||||||| |||||| |
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| T |
4118771 |
tcaataaaaaatatgcatgctaaataaaata |
4118801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 4347550 - 4347452
Alignment:
| Q |
114 |
caaaatccttgatattgaggctacaattgaagtcgaggattacaatttaaaac-ttggtcatctgataaggatacatatatctgcaatggacaatggtt |
211 |
Q |
| |
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||||||||| || || ||||||||||||||| || |||||||| ||||||| ||||| || |||||||||| |||| | ||||||||||||||||| |
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| T |
4347550 |
caaaatcctcgacgtttaggctacaattgaagctgaagattacaacttaaaaccttggtaatatgataaggatgcatacaattgcaatggacaatggtt |
4347452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 490
Target Start/End: Original strand, 4121838 - 4121875
Alignment:
| Q |
453 |
accaatgaaaaagatgcatgctaaacaaaatagttctt |
490 |
Q |
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| T |
4121838 |
accaatgaaaaatatgcatgctaaacaaaataattctt |
4121875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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