View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10432_low_3 (Length: 455)
Name: NF10432_low_3
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10432_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 12186359 - 12186786
Alignment:
| Q |
18 |
caatggcatctttcaaaatggaaacaaatgaatgttgatccaattttatgcagttagggaggagaaaagtatacttattttggtgttttttggtttgttc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12186359 |
caatggcatctttcaaaatggaaacaaatgaatgtcggtccaattctatgcagttagggaggagaaaagtagacttattttggtgttttttggtttgttg |
12186458 |
T |
|
| Q |
118 |
atttgttgaattcaacacattctgaagagattcacacttccaaacaaagaaccattgaattgattgtggaagagaaggtatagattgaagcattttacag |
217 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12186459 |
atttgttgaattcaacacattatgaagagatttacagtaccaaacatagaaccactgaattgattgtggaagagaaggtatagattgaagcattttacaa |
12186558 |
T |
|
| Q |
218 |
gcaccaacttcaagaaacatgagtcttggaagacaattaatgctttcaggtatgcttatgacaggacaatcaaatagtcttaaaaactccaatgatgata |
317 |
Q |
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|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| |||| |||||||| |||||| |
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| T |
12186559 |
taacgagcttcaagaaacatgagtcttggaagacaattaatgctttcaggtaagcttatgataggacagccaattagatataaagactccaataatgata |
12186658 |
T |
|
| Q |
318 |
gcaaggagatgttgtttgggatttcagataaattgttacaagcacagaaaattaaacgtctaacatacctgaagcaagggctagggagtactttatgcaa |
417 |
Q |
| |
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||||||||||| ||| |||||||||||||| |||||||||| || | ||| |||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
12186659 |
gcaaggagatgctgtctgggatttcagatatattgttacaatcataaaaagttaaacttttaacatacctgaagcaagggcttgggagtactttatgcaa |
12186758 |
T |
|
| Q |
418 |
ggtggttaaagtgtctttctcattcatc |
445 |
Q |
| |
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|||||| |||||||||| |||||||||| |
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| T |
12186759 |
ggtggtaaaagtgtcttgctcattcatc |
12186786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 12430787 - 12431214
Alignment:
| Q |
18 |
caatggcatctttcaaaatggaaacaaatgaatgttgatccaattttatgcagttagggaggagaaaagtatacttattttggtgttttttggtttgttc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12430787 |
caatggcatctttcaaaatggaaacaaatgaatgtcggtccaattctatgcagttagggaggagaaaagtagacttattttggtgttttttggtttgttg |
12430886 |
T |
|
| Q |
118 |
atttgttgaattcaacacattctgaagagattcacacttccaaacaaagaaccattgaattgattgtggaagagaaggtatagattgaagcattttacag |
217 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||| | ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12430887 |
atttgttgaattcaacacattatgaagagatttacagtaccaaacatagaaccactgaattgattgtggaagagaaggtatagattgaagcattttacaa |
12430986 |
T |
|
| Q |
218 |
gcaccaacttcaagaaacatgagtcttggaagacaattaatgctttcaggtatgcttatgacaggacaatcaaatagtcttaaaaactccaatgatgata |
317 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||| |||| |||||||| |||||| |
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| T |
12430987 |
taacgagcttcaagaaacatgagtcttggaagacaattaatgctttcaggtaagcttatgataggacagccaattagatataaagactccaataatgata |
12431086 |
T |
|
| Q |
318 |
gcaaggagatgttgtttgggatttcagataaattgttacaagcacagaaaattaaacgtctaacatacctgaagcaagggctagggagtactttatgcaa |
417 |
Q |
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||||||||||| ||| |||||||||||||| |||||||||| || | ||| |||||| | |||||||||||||||||||||| ||||||||||||||||| |
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| T |
12431087 |
gcaaggagatgctgtctgggatttcagatatattgttacaatcataaaaagttaaacttttaacatacctgaagcaagggcttgggagtactttatgcaa |
12431186 |
T |
|
| Q |
418 |
ggtggttaaagtgtctttctcattcatc |
445 |
Q |
| |
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|||||| |||||||||| |||||||||| |
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| T |
12431187 |
ggtggtaaaagtgtcttgctcattcatc |
12431214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 12174841 - 12175269
Alignment:
| Q |
18 |
caatggcatctttcaaaatggaaacaaatgaatgttgatccaattttatgcagttagggaggagaaaagtatacttattttggtgttttttggtttgttc |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
12174841 |
caatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttagggaggagaaaagtacgcgtattttggtgtattttggtttgttc |
12174940 |
T |
|
| Q |
118 |
atttgttgaattcaacacattctgaagagattcacacttccaaacaaagaaccattgaattgattgtggaagagaaggtatagattgaagcattttacag |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
12174941 |
atttgttcaattcaacacattctgaagagattcacagttccaaacacggaacgactgaatggattgtggaagagaaggtatagattgaagcatttcacag |
12175040 |
T |
|
| Q |
218 |
gcaccaacttcaagaaacatgagtcttggaagacaattaatgctttcaggtatgcttatgacaggacaatcaaatagtcttaaaaactccaatgatgata |
317 |
Q |
| |
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| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||| |||||||||||||| |
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| T |
12175041 |
ttagcaacttcaaaaaacatgagtcttggaagacaattaatgctttcaggtaagcttatgataggacaggcaaatagtcctaaattctccaatgatgata |
12175140 |
T |
|
| Q |
318 |
gcaaggagatgttgtttgggatttcagataaattgttacaagcacagaaaattaaacgtctaacatacctgaagcaagggctagggagtactttatgcaa |
417 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| |||| || |||| ||||| ||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
12175141 |
gcaaggagatgctgtctgggatttcagataaattgtgacaataactgaaacataaacctctaacatacctgaaacaagggctagggagtaatttatgcaa |
12175240 |
T |
|
| Q |
418 |
ggtggttaaagtgtctttctcattcatct |
446 |
Q |
| |
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|||||| ||||| ||||| |||||||||| |
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| T |
12175241 |
ggtggtcaaagtatctttgtcattcatct |
12175269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 12419269 - 12419697
Alignment:
| Q |
18 |
caatggcatctttcaaaatggaaacaaatgaatgttgatccaattttatgcagttagggaggagaaaagtatacttattttggtgttttttggtttgttc |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
12419269 |
caatggcatcattcaaaatggaaacaaatgaatgttgattcaattttatgcagttagggaggagaaaagtacgcgtattttggtgtattttggtttgttc |
12419368 |
T |
|
| Q |
118 |
atttgttgaattcaacacattctgaagagattcacacttccaaacaaagaaccattgaattgattgtggaagagaaggtatagattgaagcattttacag |
217 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
12419369 |
atttgttcaattcaacacattctgaagagattcacagttccaaacacggaacgactgaatggattgtggaagagaaggtatagattgaagcatttcacag |
12419468 |
T |
|
| Q |
218 |
gcaccaacttcaagaaacatgagtcttggaagacaattaatgctttcaggtatgcttatgacaggacaatcaaatagtcttaaaaactccaatgatgata |
317 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||| |||||||||||||| |
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| T |
12419469 |
ttagcaacttcaaaaaacatgagtcttggaagacaattaatgctttcaggtaagcttatgataggacaggcaaatagtcctaaattctccaatgatgata |
12419568 |
T |
|
| Q |
318 |
gcaaggagatgttgtttgggatttcagataaattgttacaagcacagaaaattaaacgtctaacatacctgaagcaagggctagggagtactttatgcaa |
417 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||| |||| || |||| ||||| ||||||||||||||| |||||||||||||||| ||||||||| |
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|
| T |
12419569 |
gcaaggagatgctgtctgggatttcagataaattgtgacaataactgaaacataaacctctaacatacctgaaacaagggctagggagtaatttatgcaa |
12419668 |
T |
|
| Q |
418 |
ggtggttaaagtgtctttctcattcatct |
446 |
Q |
| |
|
|||||| ||||| ||||| |||||||||| |
|
|
| T |
12419669 |
ggtggtcaaagtatctttgtcattcatct |
12419697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 13167535 - 13167495
Alignment:
| Q |
45 |
atgaatgttgatccaattttatgcagttagggaggagaaaa |
85 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| |||||| |
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|
| T |
13167535 |
atgaatgtggatccaattttatgcagttaaggagcagaaaa |
13167495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 32635424 - 32635368
Alignment:
| Q |
289 |
aaatagtcttaaaaactccaatgatgatagcaaggagatgttgtttgggatttcaga |
345 |
Q |
| |
|
||||||||||||| ||| ||||| ||||| ||||| ||||||| |||||||||||| |
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|
| T |
32635424 |
aaatagtcttaaagactttaatgacgatagtaaggaaatgttgtctgggatttcaga |
32635368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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