View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10432_low_4 (Length: 421)

Name: NF10432_low_4
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10432_low_4
NF10432_low_4
[»] chr2 (20 HSPs)
chr2 (179-403)||(11110081-11110305)
chr2 (1-185)||(11110374-11110562)
chr2 (187-403)||(11118085-11118301)
chr2 (187-391)||(11145244-11145448)
chr2 (187-392)||(10793990-10794195)
chr2 (225-400)||(11136936-11137111)
chr2 (1-116)||(11118397-11118512)
chr2 (192-390)||(11104099-11104297)
chr2 (225-391)||(11149178-11149344)
chr2 (187-390)||(11155562-11155765)
chr2 (291-383)||(11200121-11200213)
chr2 (27-90)||(10793789-10793852)
chr2 (192-321)||(11171239-11171368)
chr2 (274-390)||(11095640-11095756)
chr2 (27-81)||(11097401-11097455)
chr2 (186-323)||(11177243-11177380)
chr2 (29-90)||(11178531-11178592)
chr2 (27-83)||(11145573-11145629)
chr2 (277-388)||(11191956-11192067)
chr2 (23-83)||(11172386-11172446)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 179 - 403
Target Start/End: Complemental strand, 11110305 - 11110081
Alignment:
Q  179 aactaataatatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtctt 278  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110305 aactaaaaatatgtaccagaacagaagatattccagacgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtctt 11110206  T
Q  279 gatttgattgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgca 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110205 gatttgattgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgca 11110106  T
Q  379 tcacaaccctgtttgaatcataaat 403  Q
    |||||||||||||| ||||||||||    
T  11110105 tcacaaccctgtttcaatcataaat 11110081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 11110562 - 11110374
Alignment:
Q  1 aagtcgatctagactgaagttgggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaacctcccaacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11110562 aagtcgatctagactgaagttgggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaacctcccaacct 11110463  T
Q  101 ggacccccagtctgtggaaatagattgattgtattattttaagatcatacaatgaata-----aaagaagtaataatattcttaactaat 185  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||| |||||||||    
T  11110462 ggacccccagtctgtgtaaatagattgattgtattattttaagatcatacaatgaataaaattaaagaagtaataatatt-ttaactaat 11110374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 187 - 403
Target Start/End: Complemental strand, 11118301 - 11118085
Alignment:
Q  187 atatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgat 286  Q
    |||| ||||||||  ||||||| |||||| |||||||| ||||||||||||||||||||| ||||||| ||| |||||||||| | ||| || || ||||    
T  11118301 atatttaccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaactttattaggacaaactttttccacctcagttttaatctgat 11118202  T
Q  287 tgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaacc 386  Q
    ||||||||||||||| |||||||||||| |||||||||  |||||||||||||||| ||||||| |  || |||||||||||||||||||||||||||||    
T  11118201 tgataacatccaatcttcttaaggagtttatatttggaccagcatcttgttcactcgcaatagtagaagttttattcaacaaaactgatgcatcacaacc 11118102  T
Q  387 ctgtttgaatcataaat 403  Q
    ||| || ||||||||||    
T  11118101 ctgattcaatcataaat 11118085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 187 - 391
Target Start/End: Complemental strand, 11145448 - 11145244
Alignment:
Q  187 atatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgat 286  Q
    |||| ||||||  |||| |||| | |||| ||||| | |||||||||||||||||||||| | ||||||||||| ||||| |||   || ||||||||||    
T  11145448 atatataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgat 11145349  T
Q  287 tgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaacc 386  Q
    | | ||||||||| ||||| || |||||  | ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||    
T  11145348 tcacaacatccaaacctctcaatgagtttctgtttggaaaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgatgcatcacaacc 11145249  T
Q  387 ctgtt 391  Q
    |||||    
T  11145248 ctgtt 11145244  T

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Target: chr2; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 187 - 392
Target Start/End: Original strand, 10793990 - 10794195
Alignment:
Q  187 atatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgat 286  Q
    ||||||||||| |  |||||||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||  |||    
T  10793990 atatgtaccaggacggaagatattctagcagcaagtgcaagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgat 10794089  T
Q  287 tgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaacc 386  Q
    | | ||| | ||| ||||||| ||||||||||||||| | ||| | | |||| ||||| ||||| || ||||| |||| |||||  |||||||| |||||    
T  10794090 tcacaacttgcaaacctcttatggagttgatatttgggagagcttgtagttcgctcacgatagtagcagtgttgttcagcaaaatggatgcatcgcaacc 10794189  T
Q  387 ctgttt 392  Q
    ||||||    
T  10794190 ctgttt 10794195  T

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Target: chr2; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 225 - 400
Target Start/End: Complemental strand, 11137111 - 11136936
Alignment:
Q  225 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 324  Q
    |||||||||||||||||||||| | ||||| ||||| |||||||||   || ||||||||||| | ||||||||| |||| ||  ||||||||||||||     
T  11137111 aagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagttgatatttggg 11137012  T
Q  325 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtttgaatcata 400  Q
    ||||| ||||||||||||||||| ||  | || || ||||| |||||||||||||||||||||||||  |||||||    
T  11137011 aaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaaccctgttacaatcata 11136936  T

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Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 11118512 - 11118397
Alignment:
Q  1 aagtcgatctagactgaagttgggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaacctcccaacct 100  Q
    |||| ||||||||||| || |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| | ||||||   |||||||    
T  11118512 aagttgatctagactggagctgggacctggaagatttctattggcaagggattgatttgctgttagactatcccttcttcccaatggaacgatccaacct 11118413  T
Q  101 ggacccccagtctgtg 116  Q
    ||||||||| ||||||    
T  11118412 ggacccccactctgtg 11118397  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 192 - 390
Target Start/End: Complemental strand, 11104297 - 11104099
Alignment:
Q  192 taccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgata 291  Q
    ||||||||||||||||| | |||| ||||  |||||||||||||||||||||||  | ||||| ||  ||| ||| |||   |||||||||| ||| | |    
T  11104297 taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgattttattcaca 11104198  T
Q  292 acatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgt 390  Q
    |||||||| |   |||| |||||  | |||||||| |||||||||||||||||||| ||  | ||||| ||||||||||||||| ||||||| ||||||    
T  11104197 acatccaaacgctttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt 11104099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 225 - 391
Target Start/End: Complemental strand, 11149344 - 11149178
Alignment:
Q  225 aagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgataacatccaatcctcttaaggagttgatatttgga 324  Q
    |||||||||||| ||||||||| | ||||| ||||| ||||||||    || ||||||||||| | |||||| || |||||||| |||||  | ||||||    
T  11149344 aagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctcttaatgagtttctgtttgga 11149245  T
Q  325 aaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgtt 391  Q
    ||||||||||||||||||||||  ||  | || || ||||  |||||||||||||||||||||||||    
T  11149244 aaagcatcttgttcactcacaacggtatcagttttgttcagtaaaactgatgcatcacaaccctgtt 11149178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 390
Target Start/End: Complemental strand, 11155765 - 11155562
Alignment:
Q  187 atatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgat 286  Q
    ||||||||||||| ||| |||  |  ||| ||||| | |||||||||||||||||||||| | ||||| |||||  |||| |    ||| ||||| ||||    
T  11155765 atatgtaccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgat 11155666  T
Q  287 tgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaacc 386  Q
    | | ||||||||| |||||||| |||||| ||||||||||||| | |||||| || || || || || || || ||||||||||| || |||||||| ||    
T  11155665 ttacaacatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatcc 11155566  T
Q  387 ctgt 390  Q
    ||||    
T  11155565 ctgt 11155562  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 383
Target Start/End: Complemental strand, 11200213 - 11200121
Alignment:
Q  291 aacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcaca 383  Q
    ||||||||| ||||||| ||||||||||||||||||||| | |||||| || || || ||||| ||||| |||| |||||| |||||||||||    
T  11200213 aacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcaca 11200121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 10793789 - 10793852
Alignment:
Q  27 ctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaac 90  Q
    |||||||||||||||| || |||| | |||||||||||||||||||||||||||| | ||||||    
T  10793789 ctggaagattttgatttgcgagggttcgatttgctgttagactatcccttcttcccaatggaac 10793852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 321
Target Start/End: Complemental strand, 11171368 - 11171239
Alignment:
Q  192 taccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgata 291  Q
    |||||||| ||| || ||| |||| ||||| | |||||||||||||||||||||  | ||||| ||||| |||||||||   || ||||||||||| | |    
T  11171368 taccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgattcaca 11171269  T
Q  292 acatccaatcctcttaaggagttgatattt 321  Q
    ||||| || |||||||  |||||| |||||    
T  11171268 acatctaaacctcttattgagttgttattt 11171239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 390
Target Start/End: Complemental strand, 11095756 - 11095640
Alignment:
Q  274 gtcttgatttgattgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactg 373  Q
    ||||||||||| || | ||||||||| || ||||| ||||| || |||||||  |||||||| ||||| || || ||    ||||| |||||||||||||    
T  11095756 gtcttgatttggtttacaacatccaaaccccttaatgagtttatgtttggaagtgcatcttgctcacttactatggtattagtgttgttcaacaaaactg 11095657  T
Q  374 atgcatcacaaccctgt 390  Q
    || ||||||||||||||    
T  11095656 atccatcacaaccctgt 11095640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 11097455 - 11097401
Alignment:
Q  27 ctggaagattttgattggcaagggattgatttgctgttagactatcccttcttcc 81  Q
    ||||||| |||||||| ||||||| ||| |||||||||| |||||||||||||||    
T  11097455 ctggaaggttttgatttgcaagggcttggtttgctgttaaactatcccttcttcc 11097401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 323
Target Start/End: Complemental strand, 11177380 - 11177243
Alignment:
Q  186 aatatgtaccagaatagaagatattccagccgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttga 285  Q
    ||||| |||||||  |||||||||| |||| | ||| | |||||||||||||||||||||  | ||||| ||||| ||||||||    || ||||| ||     
T  11177380 aatatataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggacaagcattttccaccgctgttttgatctgg 11177281  T
Q  286 ttgataacatccaatcctcttaaggagttgatatttgg 323  Q
    || || || ||||| ||||||| ||||||| |||||||    
T  11177280 tttatcacgtccaaacctcttatggagttgttatttgg 11177243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 11178592 - 11178531
Alignment:
Q  29 ggaagattttgattggcaagggattgatttgctgttagactatcccttcttcctagtggaac 90  Q
    ||||||||||||   |||||||| | ||||||||||| ||||||||||||||||| ||||||    
T  11178592 ggaagattttgagctgcaagggaattatttgctgttaaactatcccttcttcctaatggaac 11178531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 11145629 - 11145573
Alignment:
Q  27 ctggaagattttgattggcaagggattgatttgctgttagactatcccttcttccta 83  Q
    |||||||||||||||| ||||| ||||| |||||||||| || ||| ||||||||||    
T  11145629 ctggaagattttgattagcaagtgattggtttgctgttaaaccatctcttcttccta 11145573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 388
Target Start/End: Original strand, 11191956 - 11192067
Alignment:
Q  277 ttgatttgattgataacatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatg 376  Q
    ||||||||||| | || |||||| |||||||  |||||  ||||||| |||||  |||| |||||||| |||||  | | || ||||||||| | |||||    
T  11191956 ttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgatg 11192055  T
Q  377 catcacaaccct 388  Q
    ||||||||||||    
T  11192056 catcacaaccct 11192067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 11172446 - 11172386
Alignment:
Q  23 ggacctggaagattttgattggcaagggattgatttgctgttagactatcccttcttccta 83  Q
    |||| ||||||||||  ||| ||||||| | |||||||||||| |||||| ||||||||||    
T  11172446 ggacttggaagatttatattagcaagggttagatttgctgttaaactatctcttcttccta 11172386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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