View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10432_low_8 (Length: 287)
Name: NF10432_low_8
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10432_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 53867137 - 53866880
Alignment:
| Q |
19 |
agaaagcaatctacctttccggggcagtagaaaacaattctttaagttcttcaggttgcaaatacccatcctgaaggagtgaaaaaatgtgattaaattt |
118 |
Q |
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| T |
53867137 |
agaaagcaatctacctttccggggcagtagaaaacaattctttaagttcttcaggttgcaaatacccatcctgaaggagtgaaaaaatgtgattaaattt |
53867038 |
T |
|
| Q |
119 |
caatttgtatattacaataaatccggttgagataatgtctgaaaatcactaatgagaagcattaaaaagtgaaaatattaaagaacgtgtgagcggctga |
218 |
Q |
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| T |
53867037 |
caatttgtatattacaataaatccggttgagataatgtctgaaaatcactaatgagaagcattaaaaagtgaaaatattaaagaacgtgtgagcggctga |
53866938 |
T |
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| Q |
219 |
catacagaattaatatcaaacgcaacaaatattttcttcaagaaatcaagagcttcat |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53866937 |
catacagaattaatatcaaacgcaacaaatattttcttcaagaaatcaagagattcat |
53866880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 54160206 - 54160267
Alignment:
| Q |
19 |
agaaagcaatctacctttccggggcagtagaaaacaattctttaagttcttcaggttgcaaa |
80 |
Q |
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| T |
54160206 |
agaaagcaatctacctttctggggcagtaaaaaacaattcttcaagttcttcaggttgcaaa |
54160267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 36874901 - 36874857
Alignment:
| Q |
23 |
agcaatctacctttccggggcagtagaaaacaattctttaagttc |
67 |
Q |
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| T |
36874901 |
agcaatctacctttccggggcagtggaaaacaattcttcaagttc |
36874857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 15049735 - 15049779
Alignment:
| Q |
23 |
agcaatctacctttccggggcagtagaaaacaattctttaagttc |
67 |
Q |
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|||||||||||||||||| ||||||||||||| ||||| |||||| |
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| T |
15049735 |
agcaatctacctttccggagcagtagaaaacagttcttcaagttc |
15049779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 17882255 - 17882302
Alignment:
| Q |
20 |
gaaagcaatctacctttccggggcagtagaaaacaattctttaagttc |
67 |
Q |
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||||||| ||||||| || || |||||||||||||||||||||||||| |
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| T |
17882255 |
gaaagcagtctacctgtctggagcagtagaaaacaattctttaagttc |
17882302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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