View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10432_low_9 (Length: 283)
Name: NF10432_low_9
Description: NF10432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10432_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4736440 - 4736574
Alignment:
| Q |
1 |
aggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatg |
100 |
Q |
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| T |
4736440 |
aggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcctactatatagtactactttttgatg |
4736539 |
T |
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| Q |
101 |
aattttataatatgatgtaataataagaataagtt |
135 |
Q |
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| T |
4736540 |
aattttataatatgatgtaataataagaataagtt |
4736574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 4736557 - 4736645
Alignment:
| Q |
176 |
taataataagaataagtttcctttattgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtacagagtac |
264 |
Q |
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| T |
4736557 |
taataataagaataagtttcctttgttgtccttaatacggagaagatttgaaatgcaatgaaaaaagctcctcaagttgtagagagtac |
4736645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4744951 - 4745025
Alignment:
| Q |
1 |
aggctacatgaaggtgctaagggaaagtagtgcaactggaggtcaatgtagcattgctgtacatgctgcttatcc |
75 |
Q |
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| T |
4744951 |
aggctacatgaagttgttgagggaaagtggtgaaccaggaggtcaatgtggcattgctgcacatgcttcttatcc |
4745025 |
T |
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