View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10433_high_1 (Length: 498)
Name: NF10433_high_1
Description: NF10433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10433_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 474
Target Start/End: Original strand, 51062722 - 51063200
Alignment:
| Q |
8 |
gaagcaaaggtagttaactcaaataagggcttgaactgtcaatgtcattttgtcaggtaaagatatctaggagatttcccactgca-------------- |
93 |
Q |
| |
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|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51062722 |
gaagcaaaggtagttaactcaaattatggcttgaactgtcaatgtcattttgtcaggtaaagatatctaggagatttcccactgcaatgcaatagaaagc |
51062821 |
T |
|
| Q |
94 |
------caatgtatattgaaatttcaggcattttttagataacacaactcatttcttaaccaacggcaagatgaaatgcgacattctggactaagcatta |
187 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
51062822 |
atttcacaatgtatattgaaatttcaggcattttttagataacacaactcatttcttaattaacggcaagatgaaatgcgacattgtggactaagcatta |
51062921 |
T |
|
| Q |
188 |
tacaatatatataagttttggtnnnnnnnnnnnnnnnnntatcatacaagataattgtgtcactattctaattaagggctattttttagtttaccacaat |
287 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51062922 |
tacaatatatataagttttggtaaaaaaaaa--------tatcatacaagataattgtgtcactactctaattaagggctattttttagtttaccacaat |
51063013 |
T |
|
| Q |
288 |
caaaattagatttcttcaataactgactagctaagtatgtagccaaaattttatccctgaagaagttaaccaattttgaaccactttcctgaatataacc |
387 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51063014 |
caaaattagatttcttcaataactgactagctaagtatgtagccaaaattttatccctgaagaagttaaccaattttgaaccactttcctgaatagaacc |
51063113 |
T |
|
| Q |
388 |
cacaaaataatttgcaataatgagatcaatgcatctccattttctctcatttgcatatttcttcaaactttcctcaatccttttgta |
474 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||||| |
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| T |
51063114 |
cacaaaataatttgcaataatgagatcaatgcatctccatcttctctcctttgcatatttcttgaaaccttcctcaatccttttgta |
51063200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 271 - 474
Target Start/End: Original strand, 51030257 - 51030460
Alignment:
| Q |
271 |
ttttagtttaccacaatcaaaattagatttcttcaataactgactagctaagtatgtagccaaaattttatccctgaagaagttaaccaattttgaacca |
370 |
Q |
| |
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|||||||| ||||||||||||| || |||||||| || ||| ||||| | ||||||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
51030257 |
ttttagttgtccacaatcaaaatctgacttcttcaacaattgagcagctaggaatgtagccagaattttatccctaaagaagttaacagattttgaacca |
51030356 |
T |
|
| Q |
371 |
ctttcctgaatataacccacaaaataatttgcaataatgagatcaatgcatctccattttctctcatttgcatatttcttcaaactttcctcaatccttt |
470 |
Q |
| |
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|||| |||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51030357 |
ctttgttgaatataacccacaatataagatgcagtaatgagatcaatgcatctccattttctctcatttgcatatttcttcaaactttcctcaatccttt |
51030456 |
T |
|
| Q |
471 |
tgta |
474 |
Q |
| |
|
|||| |
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|
| T |
51030457 |
tgta |
51030460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 273 - 474
Target Start/End: Complemental strand, 40618401 - 40618200
Alignment:
| Q |
273 |
ttagtttaccacaatcaaaattagatttcttcaataactgactagctaagtatgtagccaaaattttatccctgaagaagttaaccaattttgaaccact |
372 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||| |||||| |||||| ||||||||||||||||||| || |||||||| |||||||||||||||| |
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| T |
40618401 |
ttagttttccacaatcaaaatcagacttcttcaacaactgatgggctaagaatgtagccaaaattttatctctaaagaagttgaccaattttgaaccacc |
40618302 |
T |
|
| Q |
373 |
ttcctgaatataacccacaaaataatttgcaataatgagatcaatgcatctccattttctctcatttgcatatttcttcaaactttcctcaatccttttg |
472 |
Q |
| |
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|| ||||||| ||||||||| |||| | | ||||||||||||| |||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
40618301 |
ttgctgaatagaacccacaacataagatctaccaatgagatcaatggatctccatcttctctcctttgcatatttcttcaaaccttcctcaatccttttg |
40618202 |
T |
|
| Q |
473 |
ta |
474 |
Q |
| |
|
|| |
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|
| T |
40618201 |
ta |
40618200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 350 - 471
Target Start/End: Original strand, 51034605 - 51034726
Alignment:
| Q |
350 |
aagttaaccaattttgaaccactttcctgaatataacccacaaaataatttgcaataatgagatcaatgcatctccattttctctcatttgcatatttct |
449 |
Q |
| |
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|||||||| ||||||||||||||||| |||||| ||||||||| |||| ||| | |||| ||||||| ||||||||| ||||||| ||||||||||||| |
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| T |
51034605 |
aagttaacaaattttgaaccactttcatgaatagaacccacaatataacttgtagtaattagatcaacccatctccatcttctctcctttgcatatttct |
51034704 |
T |
|
| Q |
450 |
tcaaactttcctcaatcctttt |
471 |
Q |
| |
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|||||| ||| ||||||||||| |
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|
| T |
51034705 |
tcaaaccttcttcaatcctttt |
51034726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 474
Target Start/End: Original strand, 51068564 - 51068781
Alignment:
| Q |
255 |
ctaattaagggctattttttagtttaccacaatcaaaattagatttcttcaataactgactagctaagtatgtagccaaaattttatccctgaagaagtt |
354 |
Q |
| |
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|||||||||||||| || |||||||||||||||||| ||||||||| |||||||||| ||||| ||| |||||||||||| ||||| || || | |
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| T |
51068564 |
ctaattaagggctaattg--agtttaccacaatcaaaaccagatttcttgaataactgaccagctagtaatggagccaaaattttgtccctaaaaaatgt |
51068661 |
T |
|
| Q |
355 |
aaccaattttgaaccactttcctgaatataacccacaaaataatttgcaataatgagatcaatgcatctccattttctctcatttgcatatttcttcaaa |
454 |
Q |
| |
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||| ||||||||| || | ||||||| ||| ||| |||| || | |||| |||||||||||||||||| |||| || ||||||||||||||||| |
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| T |
51068662 |
aacaaattttgaatcagcctgctgaataacacctgcaatataagctgtagtaataagatcaatgcatctccatcttctttcttttgcatatttcttcaac |
51068761 |
T |
|
| Q |
455 |
ctttcctcaatccttttgta |
474 |
Q |
| |
|
| || ||||| |||||||| |
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|
| T |
51068762 |
ccttgttcaattcttttgta |
51068781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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