View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10433_low_2 (Length: 418)
Name: NF10433_low_2
Description: NF10433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10433_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 27814174 - 27814564
Alignment:
| Q |
18 |
gaatgggcaatataatcaatttagaatcaaacataatttaaataatgtaaatgcttaattgcactttttcccctatcatttaataaagctcttcaaagaa |
117 |
Q |
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| T |
27814174 |
gaatgggcaatataatcaatttagaatcaaacataatttaaataatgtaaaggcttaattgcactttttcccctatcatttaataaagctcttcaaagaa |
27814273 |
T |
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| Q |
118 |
tctaaagattatgtgtgccagtaaagacactgaaggactgaataaggcgttcaaagaccataagagctctcaatgccatcaaacagttatctcttttgaa |
217 |
Q |
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| T |
27814274 |
tctaaagactatgtgtgccagtcaagacagtgaaggactgaataaggcattcaaagaccataagagttctcaatgccatcaaatagttatctcttttgaa |
27814373 |
T |
|
| Q |
218 |
tctataaatagagcaccgtattnnnnnnntttaggaatttctcattccaagatattcttcaaactttagtccataattacttgaatgttaaagtgtgttt |
317 |
Q |
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| T |
27814374 |
tctataaatagagcaccgtattaaaaaaatgtaggaatttctcattccaagatattcttcaaactttagtccataattacttgaatgttaaagtgtcttt |
27814473 |
T |
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| Q |
318 |
gcatgtacaccagcccatgctagtgaggaacgttcgacaaacatcatcgacaattgtggttgcatcgtaatacctgctctgactgtctgtg |
408 |
Q |
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| T |
27814474 |
gcatgtacaccagcccacgctagtgaggaacgttcaacaaacatcattgtcaattgtggttgcatcgtaatacctgctctgactgtctgtg |
27814564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 27815944 - 27816055
Alignment:
| Q |
95 |
atttaataaagctcttcaaagaatctaaagattatgtgtgccagtaaagacactgaaggactgaataaggcgttcaaagaccataagagctctcaatgcc |
194 |
Q |
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| T |
27815944 |
atttaataaagctcttcaaagaatctaaagattatgtgtgccagtaaagacaatgaagcattgaataaggcgttcaaagtccataagagctctccatgcc |
27816043 |
T |
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| Q |
195 |
atcaaacagtta |
206 |
Q |
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| T |
27816044 |
atcaaacagtta |
27816055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 27816106 - 27816207
Alignment:
| Q |
205 |
tatctcttttgaatctataaatagagcaccgtattnnnnnnntttaggaatttctcattccaagatattcttcaaactttagtccataattacttgaatg |
304 |
Q |
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|||||||||||||||||||||||||||||| |||| | || |||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
27816106 |
tatctcttttgaatctataaatagagcaccatattaaaaaaatgtacgaatttctcattccaagatattcttcaaacatgagtccataattacttgaatg |
27816205 |
T |
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| Q |
305 |
tt |
306 |
Q |
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|| |
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|
| T |
27816206 |
tt |
27816207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 399
Target Start/End: Original strand, 27816473 - 27816562
Alignment:
| Q |
310 |
gtgtgtttgcatgtacaccagcccatgctagtgaggaacgttcgacaaacatcatcgacaattgtggttgcatcgtaatacctgctctga |
399 |
Q |
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| T |
27816473 |
gtgtctttgcaggtacaccacctcacgctagtgaggaacgttcaacaaacatcatcgacaattgtaattgcattgtaatacctgctctga |
27816562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 405
Target Start/End: Original strand, 38710859 - 38711015
Alignment:
| Q |
253 |
aatttctcattccaagatattcttcaaa----ctttagtccataattacttgaatgttaaagtgtgtttgcatgtacaccagcccatgctagtgaggaac |
348 |
Q |
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| T |
38710859 |
aatttctcggtccaagatattcctcaaaacaccttgagaccttaattacttgaacgttagagtgtctttgcaagtacaccatcccacgctagtgaagaac |
38710958 |
T |
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| Q |
349 |
gttcgacaaacatcatcgacaattgtggttgcatcgtaatacctgctctgactgtct |
405 |
Q |
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| T |
38710959 |
gttcaacaaacgccttcgacaattgtagttgcatcataacaccttctttgaccgtct |
38711015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 43323617 - 43323567
Alignment:
| Q |
17 |
agaatgggcaatataatcaatttagaatcaaacataatttaaataatgtaaa |
68 |
Q |
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|||||| ||||||||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
43323617 |
agaatgagcaatataatcaatttagaat-aaacataatctaaatgatgtaaa |
43323567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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