View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10433_low_3 (Length: 412)

Name: NF10433_low_3
Description: NF10433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10433_low_3
NF10433_low_3
[»] chr4 (18 HSPs)
chr4 (1-403)||(1326009-1326412)
chr4 (1-98)||(4875907-4876004)
chr4 (7-98)||(44185371-44185462)
chr4 (240-337)||(2527703-2527800)
chr4 (238-337)||(11653570-11653669)
chr4 (241-332)||(46420749-46420840)
chr4 (242-331)||(24539270-24539359)
chr4 (241-322)||(49748217-49748298)
chr4 (242-337)||(9061519-9061614)
chr4 (266-393)||(4875454-4875581)
chr4 (228-333)||(42351123-42351228)
chr4 (242-331)||(49357896-49357985)
chr4 (265-388)||(54243649-54243772)
chr4 (248-337)||(22455138-22455225)
chr4 (241-327)||(40682125-40682211)
chr4 (259-322)||(12758477-12758540)
chr4 (241-279)||(44783708-44783746)
chr4 (266-331)||(23633373-23633438)
[»] chr3 (11 HSPs)
chr3 (241-403)||(49453230-49453392)
chr3 (275-403)||(38362731-38362859)
chr3 (1-94)||(5387503-5387596)
chr3 (242-337)||(51657245-51657340)
chr3 (242-337)||(49067080-49067175)
chr3 (233-337)||(40823603-40823706)
chr3 (244-337)||(48314571-48314664)
chr3 (242-329)||(13495951-13496038)
chr3 (240-335)||(5557889-5557984)
chr3 (239-278)||(30761264-30761303)
chr3 (241-276)||(53926345-53926380)
[»] chr6 (5 HSPs)
chr6 (242-403)||(28078623-28078784)
chr6 (241-337)||(26898834-26898930)
chr6 (315-401)||(8674808-8674894)
chr6 (315-401)||(8685487-8685573)
chr6 (273-335)||(14365977-14366039)
[»] chr5 (7 HSPs)
chr5 (279-403)||(29379938-29380062)
chr5 (242-337)||(42691629-42691724)
chr5 (237-331)||(19121278-19121372)
chr5 (241-337)||(17413501-17413597)
chr5 (242-317)||(5399100-5399175)
chr5 (265-337)||(35392147-35392219)
chr5 (285-337)||(43622691-43622743)
[»] scaffold0891 (1 HSPs)
scaffold0891 (242-337)||(1259-1354)
[»] chr7 (13 HSPs)
chr7 (241-332)||(729013-729104)
chr7 (247-393)||(36159375-36159521)
chr7 (241-393)||(38029580-38029733)
chr7 (242-337)||(16718882-16718977)
chr7 (242-337)||(17693092-17693187)
chr7 (242-337)||(29322634-29322729)
chr7 (242-337)||(39703883-39703978)
chr7 (242-331)||(40462315-40462404)
chr7 (266-337)||(26455241-26455312)
chr7 (242-337)||(34405054-34405149)
chr7 (275-337)||(24396474-24396536)
chr7 (284-337)||(2732828-2732881)
chr7 (284-332)||(20078065-20078113)
[»] chr8 (7 HSPs)
chr8 (276-389)||(25629537-25629650)
chr8 (238-337)||(41842816-41842915)
chr8 (241-337)||(34893023-34893119)
chr8 (239-320)||(37063918-37063999)
chr8 (254-337)||(16913160-16913244)
chr8 (235-289)||(27853769-27853823)
chr8 (241-337)||(15096696-15096793)
[»] scaffold0210 (2 HSPs)
scaffold0210 (242-317)||(17760-17835)
scaffold0210 (242-317)||(25652-25727)
[»] chr2 (4 HSPs)
chr2 (242-337)||(37995369-37995464)
chr2 (241-318)||(12008478-12008555)
chr2 (272-337)||(10128587-10128652)
chr2 (245-317)||(25882661-25882733)
[»] scaffold0044 (1 HSPs)
scaffold0044 (242-337)||(87829-87924)
[»] chr1 (6 HSPs)
chr1 (242-337)||(50290335-50290430)
chr1 (244-337)||(39268247-39268340)
chr1 (241-320)||(8998819-8998898)
chr1 (247-330)||(49193134-49193217)
chr1 (241-278)||(23085899-23085936)
chr1 (280-336)||(52407913-52407969)
[»] scaffold0090 (1 HSPs)
scaffold0090 (242-337)||(12588-12683)
[»] scaffold1155 (1 HSPs)
scaffold1155 (242-330)||(68-156)
[»] scaffold0642 (1 HSPs)
scaffold0642 (242-330)||(150-238)
[»] scaffold0345 (1 HSPs)
scaffold0345 (242-330)||(10061-10149)
[»] scaffold0105 (1 HSPs)
scaffold0105 (242-330)||(28831-28919)
[»] scaffold0246 (1 HSPs)
scaffold0246 (275-337)||(8829-8891)
[»] scaffold0108 (1 HSPs)
scaffold0108 (242-332)||(13602-13691)


Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 1326412 - 1326009
Alignment:
Q  1 tgagagatttgaggggtaatttggaaagaatagagaaggaaatgtcatcggcaatatagctagtgttgctaaccttgtcactttttgtagccatggatgg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1326412 tgagagatttgagaggtaatttggaaagaatagagaaggaaatgtcatcagcaatatagctagtgttgctaaccttgtcactttttgtagccatggatgg 1326313  T
Q  101 atttctttgtcaaagctgaagccaattctctgtaagcgtgcaatccaaactactttgttttgtgacaaacaaa-cggttgtgagcttatggtctactagc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1326312 atttctttgtcaaagctgaagccaattctctgtaagcgtgcaatccaaagtactttgttttgtgacaaacaaaacggttgtgagcttatggtctactagc 1326213  T
Q  200 gtttagggtttttattataccaacgtgtataaattataaataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  1326212 gtttagggtttttattataccaacgtgtataaattataaataattagaccatcgacccgtgctatcgcacgcgtcatatcgaaggtaatatttgacagta 1326113  T
Q  300 acatgtaacaaaatagtttagataaatgtcataattgttctgattaaattcataatattaattatcatagacattggtactgtatcatatcatatgatgt 399  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||     
T  1326112 acatgtaacaaaatagtttagttgaatgtcataattgttctgattaaattcataatattaattatcatagacattggtactatatcatatcatattatga 1326013  T
Q  400 ccat 403  Q
    ||||    
T  1326012 ccat 1326009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4876004 - 4875907
Alignment:
Q  1 tgagagatttgaggggtaatttggaaagaatagagaaggaaatgtcatcggcaatatagctagtgttgctaaccttgtcactttttgtagccatggat 98  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||||||||    
T  4876004 tgagagattggaggggtaatttggaaagaatagaaaaggaaatgtcatcgggaatatagctacggttactaaccttgtcactttttgtagccatggat 4875907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 44185462 - 44185371
Alignment:
Q  7 atttgaggggtaatttggaaagaatagagaaggaaatgtcatcggcaatatagctagtgttgctaaccttgtcactttttgtagccatggat 98  Q
    |||||||||||||||||||||||||||| || ||||| ||||| | ||||||||||  ||| ||||||||||||||||||||||||||||||    
T  44185462 atttgaggggtaatttggaaagaatagaaaacgaaatttcatcaggaatatagctacggttactaaccttgtcactttttgtagccatggat 44185371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 337
Target Start/End: Complemental strand, 2527800 - 2527703
Alignment:
Q  240 taactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||| |||||||| |||||  ||||||| |||||||||||||||  |||| |  |||||||||||||||||| ||||||||||||||    
T  2527800 taactagaccatcgatccgtgctaacgcacatgtcatatggaaggtaatatttgacggtaatagataacaaaatagtttagatgaatgtcataattgt 2527703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 11653570 - 11653669
Alignment:
Q  238 aataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||| |||||||||||||||  ||||| ||||||| |||||||||||||||  |||| | |||| |||||||||||||| |||||||| |||||    
T  11653570 aataactagatcatcgacccgtgctaatgcacgggtcatatggaaggtaatatttgacggtaataggtaataaaatagtttagatgaatgtcatgattgt 11653669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 46420840 - 46420749
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcata 332  Q
    |||||||||||||| ||||||||  |||| |||||||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||||    
T  46420840 aactagaccatcgatccgtgctaatgcacaagtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcata 46420749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 24539359 - 24539270
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcat 331  Q
    ||||||||||||||| |||||| |||||| ||||||| |||||||||||||||  |||| | |||||||||||||||| || ||||||||    
T  24539359 actagaccatcgaccagtgctaacgcacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttacatgaatgtcat 24539270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 49748217 - 49748298
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagat 322  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||  |||| | ||| |||||||||||||||    
T  49748217 aactagaccatcgacccgtgctaacgcacgggtcatatggaaggtaatatttgacggtaataggtagcaaaatagtttagat 49748298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 9061614 - 9061519
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||||||||||| ||||   ||||||| ||| ||||||||| |  |||| | ||||||||||||||||||| |||||||| |||||    
T  9061614 actagaccatcgacccgtgctaacgcataggtcatatggaatgtaatatttaacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 9061519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 393
Target Start/End: Original strand, 4875454 - 4875581
Alignment:
Q  266 gcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttctgattaaattcataatattaattatc 365  Q
    ||||| ||||||| |||||||||||||||   ||| | ||||||||||||||||||| |||||||| |||||  ||    | |||||||||||||  | |    
T  4875454 gcacgggtcatatggaaggtaatatttgacgttaataggtaacaaaatagtttagatgaatgtcatgattgtcatgtaatatttcataatattaagaagc 4875553  T
Q  366 atagacattggtactgtatcatatcata 393  Q
    |||||| ||||||||||| |||| ||||    
T  4875554 atagacgttggtactgtaccataacata 4875581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 333
Target Start/End: Complemental strand, 42351228 - 42351123
Alignment:
Q  228 ataaattataaataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatg 327  Q
    |||||| ||| || ||||||||||| |   |||||| || || |||||||| |||||||||||||||  |||| |  |||||||||||||||||| ||||    
T  42351228 ataaataatacatcactagaccatcaatttgtgctaacgtacaagtcatatggaaggtaatatttgacggtaatagataacaaaatagtttagatgaatg 42351129  T
Q  328 tcataa 333  Q
    ||||||    
T  42351128 tcataa 42351123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 331
Target Start/End: Complemental strand, 49357985 - 49357896
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcat 331  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||||||||  |||| | |||| | | || ||||||| ||||||||    
T  49357985 actagaccatcgacccgtgctaacgcactggtcatatggaaggtaatatttgacggtaataggtaaaatagtattttagatgaatgtcat 49357896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 388
Target Start/End: Complemental strand, 54243772 - 54243649
Alignment:
Q  265 cgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttctgattaaattcataatattaattat 364  Q
    |||||| ||||||| |||| ||||||||||   ||| | |||||||||||||||| ||||||||||| |||||| |     | |||||||||||||  |     
T  54243772 cgcacgggtcatatggaagttaatatttgacgataataggtaacaaaatagtttaaataaatgtcatgattgttatatagtatttcataatattaagaag 54243673  T
Q  365 catagacattggtactgtatcata 388  Q
    ||||||| ||||||||||| ||||    
T  54243672 catagacgttggtactgtaccata 54243649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 22455225 - 22455138
Alignment:
Q  248 ccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||  || |||| | ||||||| |||||||||||||||  |||| | |||| ||||||||||| || ||||||||||||||    
T  22455225 ccatcgacccgt--taacgcatgggtcatatggaaggtaatatttgacggtaataagtaataaaatagtttaaatgaatgtcataattgt 22455138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 327
Target Start/End: Original strand, 40682125 - 40682211
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatg 327  Q
    ||||||| ||| ||||| ||||| |||||| | ||||||||||||||||||| |  | || | ||||||||||||||||||| ||||    
T  40682125 aactagatcattgacccatgctaacgcacgggacatatcgaaggtaatatttaacggcaataggtaacaaaatagtttagatgaatg 40682211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 322
Target Start/End: Original strand, 12758477 - 12758540
Alignment:
Q  259 tgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagat 322  Q
    ||||| || ||| ||||||| |||||||||||||||  |||| | |||||||||||||||||||    
T  12758477 tgctaacgtacgggtcatatggaaggtaatatttgacggtaataagtaacaaaatagtttagat 12758540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 44783708 - 44783746
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatc 279  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  44783708 aactagaccatcgacccgtgctatcgcacgggtcttatc 44783746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 331
Target Start/End: Original strand, 23633373 - 23633438
Alignment:
Q  266 gcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcat 331  Q
    ||||| |||||| ||||||||||||||||  |||| |  ||||||||||||||| || ||||||||    
T  23633373 gcacgggtcataccgaaggtaatatttgacggtaatagataacaaaatagtttaaatgaatgtcat 23633438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 241 - 403
Target Start/End: Original strand, 49453230 - 49453392
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttct 340  Q
    |||||||||||||||| |||||||||| || | ||||| ||||||||||||| | ||||| ||||| ||||||||||||| |||||||||||||||||||    
T  49453230 aactagaccatcgacctgtgctatcgcgcgggacatattgaaggtaatattttatagtaatatgtagcaaaatagtttagttaaatgtcataattgttct 49453329  T
Q  341 gattaaattcataatattaattatcatagacattggtactgtatcatatcatatgatgtccat 403  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  49453330 aattaaattcataatattaattatcatagacattggtattgtatcatatcatattatgtccat 49453392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 275 - 403
Target Start/End: Complemental strand, 38362859 - 38362731
Alignment:
Q  275 atatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttctgattaaattcataatattaattatcatagacatt 374  Q
    ||||||||||||||||||||  |||| |||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38362859 atatcgaaggtaatatttgacggtaatatgtaataaaatagtttagttgaatgtcataattgttctaattaaattcataatattaattatcatagacatt 38362760  T
Q  375 ggtactgtatcatatcatatgatgtccat 403  Q
    ||||||||| |||||||||  ||||||||    
T  38362759 ggtactgtaccatatcatagtatgtccat 38362731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5387596 - 5387503
Alignment:
Q  1 tgagagatttgaggggtaatttggaaagaatagagaaggaaatgtcatcggcaatatagctagtgttgctaaccttgtcactttttgtagccat 94  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || |||| ||||||||||||||||||||||||||    
T  5387596 tgagagatttgaggggtaatttggaaagaatagaaaaggaaatgtcatcggaaatatagttactgttactaaccttgtcactttttgtagccat 5387503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 51657340 - 51657245
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||||||||||| |||||  ||||||| |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  51657340 actagaccatcgacccgtgctaacgcacatgtcatatggaaggtaatatttgagggtaacaagtaacaaaatagtttagatgaatgtcataattgt 51657245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 49067080 - 49067175
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  49067080 actagaccatcgacccgtgctaacgcacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 49067175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 337
Target Start/End: Complemental strand, 40823706 - 40823603
Alignment:
Q  233 ttataaataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcata 332  Q
    ||||||||| |||||||||||||||||||||  ||||| ||||||| |||||||||||||||  |||| | |||| |||||||||||||| ||||||||     
T  40823706 ttataaata-ctagaccatcgacccgtgctaaggcacgggtcatatggaaggtaatatttgaccgtaataggtaaaaaaatagtttagatgaatgtcatg 40823608  T
Q  333 attgt 337  Q
    |||||    
T  40823607 attgt 40823603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 337
Target Start/End: Complemental strand, 48314664 - 48314571
Alignment:
Q  244 tagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||| ||||||||||||||| || ||| ||||||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  48314664 tagatcatcgacccgtgctaacgtacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 48314571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 329
Target Start/End: Complemental strand, 13496038 - 13495951
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtc 329  Q
    |||||||||||||||||||||| || | | |||||||||||||||||||||||  |||| | |||| |||||||||||||| ||||||    
T  13496038 actagaccatcgacccgtgctaacgtaagggtcatatcgaaggtaatatttgacggtaataggtaataaaatagtttagatgaatgtc 13495951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 335
Target Start/End: Complemental strand, 5557984 - 5557889
Alignment:
Q  240 taactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataatt 335  Q
    |||| ||||||| | ||||||||| |||||  ||||||| ||| |||||||||||   ||| | ||||||||||| ||||||| ||||||||||||    
T  5557984 taacaagaccattggcccgtgctaacgcacaggtcatatggaatgtaatatttgatgataataggtaacaaaataatttagatgaatgtcataatt 5557889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 30761264 - 30761303
Alignment:
Q  239 ataactagaccatcgacccgtgctatcgcacgagtcatat 278  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  30761264 ataactagaccatccacccgtgctatcgcacgggtcatat 30761303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 276
Target Start/End: Original strand, 53926345 - 53926380
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcat 276  Q
    ||||||||||||||||||||||| ||||||||||||    
T  53926345 aactagaccatcgacccgtgctaacgcacgagtcat 53926380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 242 - 403
Target Start/End: Original strand, 28078623 - 28078784
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttctg 341  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||   ||| ||||||||||||| ||||||  | |||||||||||||||||     
T  28078623 actagaccatcgacccgtgatatcgcacgggtcatatcgaaggtaatatttagcagtgacatgtaacaaaagagtttaattgaatgtcataattgttcta 28078722  T
Q  342 attaaattcataatattaattatcatagacattggtactgtatcatatcatatgatgtccat 403  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  28078723 attaaattcataatattaattatcatagacattggtactgtaccatatcatattatgtccat 28078784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 26898834 - 26898930
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||||||||||| | |||| ||||||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  26898834 aactagaccatcgacccgtgctaccacacgggtcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 26898930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 401
Target Start/End: Complemental strand, 8674894 - 8674808
Alignment:
Q  315 gtttagataaatgtcataattgttctgattaaattcataatattaattatcatagacattggtactgtatcatatcatatgatgtcc 401  Q
    |||||| | ||||||||||||||| | ||||||||||||||||||||||||||| | ||||||| |||| |||||||||| ||||||    
T  8674894 gtttagttgaatgtcataattgttttaattaaattcataatattaattatcatatatattggtattgtaccatatcatattatgtcc 8674808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 315 - 401
Target Start/End: Complemental strand, 8685573 - 8685487
Alignment:
Q  315 gtttagataaatgtcataattgttctgattaaattcataatattaattatcatagacattggtactgtatcatatcatatgatgtcc 401  Q
    |||||| | ||||||||||||||| | ||||||||||||||||||||||||||| | ||||||| |||| |||||||||| ||||||    
T  8685573 gtttagttgaatgtcataattgttttaattaaattcataatattaattatcatatatattggtattgtaccatatcatattatgtcc 8685487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 335
Target Start/End: Original strand, 14365977 - 14366039
Alignment:
Q  273 tcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataatt 335  Q
    |||||||||||| |||||||||  |||| |   ||||||||||||||||||||||||||||||    
T  14365977 tcatatcgaaggcaatatttgatggtaatagaaaacaaaatagtttagataaatgtcataatt 14366039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 279 - 403
Target Start/End: Complemental strand, 29380062 - 29379938
Alignment:
Q  279 cgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttctgattaaattcataatattaattatcatagacattggta 378  Q
    |||| ||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29380062 cgaaagtaatatttggcagtaacatgtaacaaaatagtttagttgaatgtcataattgttctaattaaattcataatattaattatcatagacattggta 29379963  T
Q  379 ctgtatcatatcatatgatgtccat 403  Q
    ||||| |||||||||| ||||||||    
T  29379962 ctgtaccatatcatattatgtccat 29379938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 42691629 - 42691724
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||| |||||| |||||||||||||| |||||||||||||||  || | || |||||||||||||||||| |||||||| |||||    
T  42691629 actagaccatcgacctgtgctaacgcacgagtcatatggaaggtaatatttgatggtgatatctaacaaaatagtttagatgaatgtcatgattgt 42691724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 331
Target Start/End: Original strand, 19121278 - 19121372
Alignment:
Q  237 aaataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcat 331  Q
    ||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||| |  |||| | ||||||||||||||||||| ||||||||    
T  19121278 aaataactagaccatcgacccgtgctaacgcactggtcatatggaaggtaatatttcacggtaataggtaacaaaatagtttagatgaatgtcat 19121372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 17413501 - 17413597
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||||||||   | |||||  |||||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  17413501 aactagaccatcgacccgtgtgttagcacggatcatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 17413597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 5399175 - 5399100
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtt 317  Q
    ||||||||||||| || | ||| |||||  |||||||||||||||||||||||  |||| | ||||||||||||||    
T  5399175 actagaccatcgatccatactaacgcacacgtcatatcgaaggtaatatttgacggtaataggtaacaaaatagtt 5399100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 337
Target Start/End: Original strand, 35392147 - 35392219
Alignment:
Q  265 cgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||| || |||| ||| |||||||||||  |||| | ||||||||||||||||||| ||| |||| |||||    
T  35392147 cgcacgggtgatatggaaagtaatatttgacggtaataggtaacaaaatagtttagatgaatatcatgattgt 35392219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 43622743 - 43622691
Alignment:
Q  285 taatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  43622743 taatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 43622691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 1259 - 1354
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||| |||||||| |||||| ||||||| ||||||||||||||| ||||| |  |||||||||||||||||| |||||||| |||||    
T  1259 actagaccatcgatccgtgctaacgcacgggtcatatggaaggtaatatttgacagtaatagataacaaaatagtttagatgaatgtcatgattgt 1354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 729104 - 729013
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcata 332  Q
    ||||||||||||||||||||||| || ||| |||||||||||||||||||||||  |||| | ||||| ||||||||||||| |||||||||    
T  729104 aactagaccatcgacccgtgctaacgtacgggtcatatcgaaggtaatatttgacggtaataggtaaccaaatagtttagatgaatgtcata 729013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 393
Target Start/End: Complemental strand, 36159521 - 36159375
Alignment:
Q  247 accatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttctgatta- 345  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||| ||  || |     
T  36159521 accatcgacccgtgctaacgcacgagtcatatgaaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattg-tcatataat 36159423  T
Q  346 aattcataatattaattatcatagacattggtactgtatcatatcata 393  Q
    | |||||||||||||  | ||||||| ||||||||||| |||| ||||    
T  36159422 atttcataatattaagaagcatagacgttggtactgtaccataacata 36159375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 241 - 393
Target Start/End: Complemental strand, 38029733 - 38029580
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttct 340  Q
    ||||||||||||||||||||||| | ||||  |||||| |||||||||||||||  |||| | ||||||||||||||||||| ||||| || |||||  |    
T  38029733 aactagaccatcgacccgtgctaacacacggatcatattgaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgttatgattgtcat 38029634  T
Q  341 -gattaaattcataatattaattatcatagacattggtactgtatcatatcata 393  Q
      | ||| |||||||||||||  | ||||||| ||||||||||| |||| ||||    
T  38029633 atagtaatttcataatattaagaagcatagacgttggtactgtaccataacata 38029580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 16718977 - 16718882
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||||||||  | ||||| || |||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  16718977 actagaccatcgacccgtgcattagcacgggttatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 16718882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 17693187 - 17693092
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||||||||  | ||||| || |||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  17693187 actagaccatcgacccgtgcattagcacgggttatatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 17693092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 29322729 - 29322634
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||| |||||| |||||||||| |||||  ||||||| |||||||||||||||  |||| |  |||||||||||||||||| ||||||||||||||    
T  29322729 actaaaccatctacccgtgctaacgcaccggtcatatggaaggtaatatttgacggtaatagataacaaaatagtttagatgaatgtcataattgt 29322634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 39703883 - 39703978
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||||||||||| |||||| ||||| |||||||||| || |||  |||| | ||| ||||||||||||||| |||||||| |||||    
T  39703883 actagaccatcgacccgtgctaacgcacgggtcatttcgaaggtaaaatatgacggtaataggtagcaaaatagtttagatgaatgtcatgattgt 39703978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 40462315 - 40462404
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcat 331  Q
    |||||||||||||||||||||| |||||| |||||||  ||||||||||||||  ||||   |||| |||||||||||||| ||||||||    
T  40462315 actagaccatcgacccgtgctaacgcacgggtcatatgaaaggtaatatttgatggtaattggtaataaaatagtttagatgaatgtcat 40462404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 266 - 337
Target Start/End: Complemental strand, 26455312 - 26455241
Alignment:
Q  266 gcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||| |||||||||||||||||||||||  |||| |  ||||||||||||||||||||||||||| |||||    
T  26455312 gcacgggtcatatcgaaggtaatatttgacggtaatagataacaaaatagtttagataaatgtcatgattgt 26455241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 34405054 - 34405149
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||  ||||||| || ||| || |||| |||||||||||||||  |||| | |||||||||||||||| || |||||||| |||||    
T  34405054 actagaccatcgattcgtgctaacgtacgggtaatatggaaggtaatatttgacggtaataagtaacaaaatagtttaaatgaatgtcatgattgt 34405149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 24396474 - 24396536
Alignment:
Q  275 atatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||| |||||||||||||||  |||| | ||||||||||| ||||||| |||||||| |||||    
T  24396474 atatggaaggtaatatttgacggtaataggtaacaaaataatttagatgaatgtcatgattgt 24396536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 2732828 - 2732881
Alignment:
Q  284 gtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  2732828 gtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 2732881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 20078113 - 20078065
Alignment:
Q  284 gtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcata 332  Q
    |||||||||||  |||| | ||||||||||||||||||| |||||||||    
T  20078113 gtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcata 20078065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 276 - 389
Target Start/End: Original strand, 25629537 - 25629650
Alignment:
Q  276 tatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgttctgattaaattcataatattaattatcatagacattg 375  Q
    ||||||||||||||||||    ||||||||||||||||||||||| | |||||||||||||| || ||| || ||||||||||||||| ||||||| |||    
T  25629537 tatcgaaggtaatatttggcgctaacatgtaacaaaatagtttagttgaatgtcataattgtcctaattcaaatcataatattaattaccatagacgttg 25629636  T
Q  376 gtactgtatcatat 389  Q
     |||| || |||||    
T  25629637 ttactttaccatat 25629650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 41842816 - 41842915
Alignment:
Q  238 aataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||||||||||||||  ||||  ||||||| ||| ||||||| |||  |||| | ||||||||||||||||||| |||||||| |||||    
T  41842816 aataactagaccatcgacccgtgctaatgcacaggtcatatggaaagtaatatctgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 41842915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 34893023 - 34893119
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||| ||||||||||| ||||| |||||||  || ||||||||||||  |||| | ||||||||| |||||| || ||||||||||||||    
T  34893023 aactagaccattgacccgtgctaacgcacaagtcataaggagggtaatatttgacggtaataggtaacaaaacagtttaaatgaatgtcataattgt 34893119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 37063999 - 37063918
Alignment:
Q  239 ataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttag 320  Q
    ||||||||||||| |||||||||  | ||||| ||||||||||| ||||||||||| | ||| | |||||||||||||||||    
T  37063999 ataactagaccattgacccgtgcgttagcacgggtcatatcgaaagtaatatttgacaataataagtaacaaaatagtttag 37063918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 337
Target Start/End: Original strand, 16913160 - 16913244
Alignment:
Q  254 acccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgt-aacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||| |||||| ||||||| |||||||||||||||  |||| |||| ||||||||||||||||| || ||||| |||||    
T  16913160 acccgtgctaacgcacgggtcatatggaaggtaatatttgacggtaatatgtaaacaaaatagtttagatgaaagtcatgattgt 16913244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 27853769 - 27853823
Alignment:
Q  235 ataaataactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaata 289  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||    
T  27853769 ataaacaactagaccatcgacccgtgctaacgcacgggtcatattgaaggtaata 27853823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 15096696 - 15096793
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgt-aacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||| ||||| ||  |||| || ||| || ||||||||||||||||||||  |||| | || || |||||||||||||| ||||||||||||||    
T  15096696 aactagactatcgaaccaagctaacgtacgggttatatcgaaggtaatatttgatggtaataggttaaaaaaatagtttagatgaatgtcataattgt 15096793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 17835 - 17760
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtt 317  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||||||  |||| ||||||||||||||||    
T  17835 actagaccatcgacccgtgctaatgcacgagtcatttcgaaggtaatatttgacggtaatatgtaacaaaatagtt 17760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 317
Target Start/End: Complemental strand, 25727 - 25652
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtt 317  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||||||  |||| ||||||||||||||||    
T  25727 actagaccatcgacccgtgctaatgcacgagtcatttcgaaggtaatatttgacggtaatatgtaacaaaatagtt 25652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 37995464 - 37995369
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||||||||||| | ||||  |||||| |||||||||||||||  |||  | |||||||||||||||||||||||||||| |||||    
T  37995464 actagaccatcgacccgtgctaacacacggatcatatggaaggtaatatttgacggtagtaggtaacaaaatagtttagataaatgtcatgattgt 37995369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 12008478 - 12008555
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagttt 318  Q
    ||||||||||| ||||||||||| | |||| ||||||||||||||||||||||| ||||| |  ||||||||||||||    
T  12008478 aactagaccattgacccgtgctaacacacgggtcatatcgaaggtaatatttgacagtaatagataacaaaatagttt 12008555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 337
Target Start/End: Original strand, 10128587 - 10128652
Alignment:
Q  272 gtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  10128587 gtcatatcgaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 10128652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 25882661 - 25882733
Alignment:
Q  245 agaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtt 317  Q
    |||||||| |||||||||| |||||  |||||||||||||||||||||||  |||| | ||||||||||||||    
T  25882661 agaccatcaacccgtgctaacgcacatgtcatatcgaaggtaatatttgacggtaataggtaacaaaatagtt 25882733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 87924 - 87829
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||| ||||| || ||||| ||||||||||||||  ||| ||||||||||  |||| ||||||||||||||||||||| |||||||| |||||    
T  87924 actagactatcgatccttgctaacgcacgagtcatatgaaagataatatttgacggtaatatgtaacaaaatagtttagatgaatgtcatgattgt 87829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 337
Target Start/End: Complemental strand, 50290430 - 50290335
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||||||||||||||||||||| |||||| ||||||| ||| |||||||||||  |||| | |||  |||||||||||||| |||||||| |||||    
T  50290430 actagaccatcgacccgtgctaacgcacgggtcatatggaacgtaatatttgacggtaataggtagaaaaatagtttagatgaatgtcatgattgt 50290335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 244 - 337
Target Start/End: Original strand, 39268247 - 39268340
Alignment:
Q  244 tagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||| |||| |||||| ||||||||||| |||||||||||   ||| | |||||||| || ||||||| ||||||||||||||    
T  39268247 tagaccatcgacccgcgctaacgcacgggtcatatcgaatgtaatatttgacgataataggtaacaaagtactttagatgaatgtcataattgt 39268340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 320
Target Start/End: Complemental strand, 8998898 - 8998819
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttag 320  Q
    ||||||||||| ||||||||||| |||||  ||||||||||| |||||||||||  |||| | |||||||||||||||||    
T  8998898 aactagaccattgacccgtgctaacgcacaggtcatatcgaatgtaatatttgacggtaataggtaacaaaatagtttag 8998819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 49193134 - 49193217
Alignment:
Q  247 accatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtca 330  Q
    ||||| || |||||||| |||||| ||||||| ||| |||||||||||  |||| | ||||||||||| ||||| | |||||||    
T  49193134 accattgatccgtgctaacgcacgtgtcatattgaatgtaatatttgacggtaataggtaacaaaataatttagttgaatgtca 49193217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 23085899 - 23085936
Alignment:
Q  241 aactagaccatcgacccgtgctatcgcacgagtcatat 278  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  23085899 aactagaccatcgacccgtgctaacgcacgggtcatat 23085936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 52407913 - 52407969
Alignment:
Q  280 gaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattg 336  Q
    |||||||| ||||||  |||| | ||||||||||||||||||| |||||||| ||||    
T  52407913 gaaggtaacatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattg 52407969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 337
Target Start/End: Original strand, 12588 - 12683
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    ||||||||||||||||||||||  ||||| ||||||| ||| |||||||||||  |||| | |||||||||||||||| || |||| ||| |||||    
T  12588 actagaccatcgacccgtgctaatgcacgggtcatatggaatgtaatatttgacggtaataggtaacaaaatagtttaaatgaatgacatgattgt 12683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 68 - 156
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtca 330  Q
    |||||||||||||||  ||||| |||||| || ||||||||||||||||| ||  |||| | ||||| ||||||||||||| |||||||    
T  68 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtca 156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 238 - 150
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtca 330  Q
    |||||||||||||||  ||||| |||||| || ||||||||||||||||| ||  |||| | ||||| ||||||||||||| |||||||    
T  238 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtca 150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 10149 - 10061
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtca 330  Q
    |||||||||||||||  ||||| |||||| || ||||||||||||||||| ||  |||| | ||||| ||||||||||||| |||||||    
T  10149 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtca 10061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 28831 - 28919
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtca 330  Q
    |||||||||||||||  ||||| |||||| || ||||||||||||||||| ||  |||| | ||||| ||||||||||||| |||||||    
T  28831 actagaccatcgaccgctgctaacgcacgggttatatcgaaggtaatattagacggtaataggtaactaaatagtttagatgaatgtca 28919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 8829 - 8891
Alignment:
Q  275 atatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcataattgt 337  Q
    |||| |||||||||||||||  |||| | ||||||||||||||||||| |||||||| |||||    
T  8829 atatggaaggtaatatttgacggtaataggtaacaaaatagtttagatgaatgtcatgattgt 8891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 13602 - 13691
Alignment:
Q  242 actagaccatcgacccgtgctatcgcacgagtcatatcgaaggtaatatttgagagtaacatgtaacaaaatagtttagataaatgtcata 332  Q
    |||||||||||||||||||||| |||||  || ||||||||| | ||||||||  |||| |  |||||||||||||||||| | |||||||    
T  13602 actagaccatcgacccgtgctaacgcacaggttatatcgaagat-atatttgatggtaatagataacaaaatagtttagatgattgtcata 13691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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