View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10433_low_4 (Length: 288)
Name: NF10433_low_4
Description: NF10433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10433_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 288
Target Start/End: Complemental strand, 11843615 - 11843348
Alignment:
| Q |
21 |
actggaattgaagttgttgttaaagttgctatcatcacaaattgatacgcaaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacat |
120 |
Q |
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| T |
11843615 |
actggaattgaagttgttgttaaagttgccatcatcgcaaattgatacgcaaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacat |
11843516 |
T |
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| Q |
121 |
ccaacggctagaaatttgttgtaactctgggaatacataaaaggactaactccaaggtttatagtaacggttttattgttaatannnnnnngacagtttg |
220 |
Q |
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| T |
11843515 |
ccaacggctagaaatttgttgtaactctgggaatacataaaaggactaactccaaggtttatagtaacggttttattgttaatattttgttgacagtttg |
11843416 |
T |
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| Q |
221 |
aatgataaattggattcataatctcaaccatgcctaagtccaggtaaaaattatttacctcaagattt |
288 |
Q |
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| T |
11843415 |
aatgataaattggattcataatctcaaccatgcctaagtctaggtaaacattatttacctcaagattt |
11843348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 52 - 288
Target Start/End: Complemental strand, 11848266 - 11848030
Alignment:
| Q |
52 |
tcatcacaaattgatacgcaaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctagaaatttgttgtaactctggg |
151 |
Q |
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| T |
11848266 |
tcatcgcaaattgatacacaaccaccaaccatgtttccacttgattgtataaaagcaagattgttacatccaacagctagaaatttgttgtaatcctgtg |
11848167 |
T |
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| Q |
152 |
aatacataaaaggactaactccaaggtttatagtaacggttttattgttaatannnnnnngacagtttgaatgataaattggattcataatctcaaccat |
251 |
Q |
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| T |
11848166 |
aatatatgaaaggaccgcctccaaggtttataataacggttttattgttattatattttcgacagtttggacgatgaattggattcataatctcaaccaa |
11848067 |
T |
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| Q |
252 |
gcctaagtccaggtaaaaattatttacctcaagattt |
288 |
Q |
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| T |
11848066 |
gcctaagtccaggtaaaaattatttacctcaagattt |
11848030 |
T |
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