View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10433_low_5 (Length: 287)
Name: NF10433_low_5
Description: NF10433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10433_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 3675509 - 3675240
Alignment:
| Q |
18 |
gcaattgccatattctagcctataagcaattacagggtggataaactttagcataatgtataaaacataataaaacaagtcacacatcaagaattgactc |
117 |
Q |
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| T |
3675509 |
gcaattgccacattctagcctataagcaattacagggtggataaactttagcataatgtataaaacataataaaacaagtcacacatcaagaattgactc |
3675410 |
T |
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| Q |
118 |
aattcataaaagattaactaacctg-ccgcttgtgagtttaactagtgttgctaatatgatgacctttttaattagtaaaatgatatgtaaatacctctt |
216 |
Q |
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|||||||||||| |||||||||||| | |||||||||||||| |||||| ||||||||||| |||||||||| | |||||||||||||||||||||| |
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| T |
3675409 |
aattcataaaaggttaactaacctgtaagtttgtgagtttaacttgtgttgtcaatatgatgacttttttaattaat-aaatgatatgtaaatacctctt |
3675311 |
T |
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| Q |
217 |
tgagccttgaggcaagacttgatagtcagaatgggtaatttgaatgtcaatctaaaccctacaatctcttc |
287 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3675310 |
tgagccttgaggcacgacttgatagtcagaatggataatttgaatgtcaatctaaaccctacaatctcttc |
3675240 |
T |
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