View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10434_high_10 (Length: 253)

Name: NF10434_high_10
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10434_high_10
NF10434_high_10
[»] chr5 (15 HSPs)
chr5 (18-151)||(25706981-25707114)
chr5 (194-236)||(43358411-43358453)
chr5 (194-236)||(3631260-3631302)
chr5 (194-236)||(9737821-9737863)
chr5 (194-236)||(13013369-13013411)
chr5 (194-236)||(19577294-19577336)
chr5 (194-236)||(26525344-26525386)
chr5 (194-236)||(26784913-26784955)
chr5 (195-236)||(8074355-8074396)
chr5 (197-245)||(25701538-25701586)
chr5 (195-231)||(29390275-29390311)
chr5 (197-231)||(16823137-16823171)
chr5 (194-236)||(28662118-28662160)
chr5 (194-236)||(43348635-43348677)
chr5 (194-230)||(6229073-6229109)
[»] chr2 (13 HSPs)
chr2 (194-236)||(38763715-38763757)
chr2 (193-236)||(36436296-36436339)
chr2 (194-236)||(6750121-6750163)
chr2 (194-236)||(28745609-28745651)
chr2 (194-236)||(34983277-34983319)
chr2 (194-236)||(38527175-38527217)
chr2 (198-236)||(1021189-1021227)
chr2 (194-236)||(2249582-2249624)
chr2 (148-178)||(7366210-7366240)
chr2 (194-236)||(22674855-22674897)
chr2 (194-236)||(23869664-23869706)
chr2 (194-231)||(42473567-42473604)
chr2 (196-236)||(1115155-1115195)
[»] chr1 (16 HSPs)
chr1 (194-236)||(37125694-37125736)
chr1 (194-236)||(6849754-6849796)
chr1 (194-236)||(8530084-8530126)
chr1 (194-236)||(9247014-9247056)
chr1 (194-236)||(16693063-16693105)
chr1 (194-236)||(17285408-17285450)
chr1 (194-231)||(33012171-33012208)
chr1 (192-236)||(24790436-24790480)
chr1 (197-236)||(29981824-29981863)
chr1 (194-241)||(44052573-44052620)
chr1 (197-231)||(919827-919861)
chr1 (194-236)||(29169943-29169985)
chr1 (148-178)||(40428849-40428879)
chr1 (194-230)||(17879975-17880011)
chr1 (196-236)||(37343027-37343067)
chr1 (192-236)||(42371971-42372015)
[»] chr3 (13 HSPs)
chr3 (194-231)||(1092993-1093030)
chr3 (194-236)||(18163719-18163761)
chr3 (194-236)||(29126159-29126201)
chr3 (194-236)||(50527749-50527791)
chr3 (194-236)||(52571540-52571582)
chr3 (194-230)||(16908924-16908960)
chr3 (197-236)||(2618886-2618925)
chr3 (194-236)||(7160406-7160448)
chr3 (194-236)||(52201983-52202025)
chr3 (198-231)||(7441702-7441735)
chr3 (195-236)||(13594990-13595031)
chr3 (194-231)||(22729226-22729263)
chr3 (194-230)||(12251623-12251659)
[»] chr4 (14 HSPs)
chr4 (192-236)||(22647112-22647156)
chr4 (194-236)||(2655025-2655067)
chr4 (194-236)||(6755830-6755872)
chr4 (194-236)||(36584425-36584467)
chr4 (194-236)||(40228546-40228588)
chr4 (194-236)||(44817664-44817706)
chr4 (194-236)||(51001477-51001519)
chr4 (196-236)||(18491188-18491228)
chr4 (196-236)||(19653761-19653801)
chr4 (198-236)||(11651085-11651123)
chr4 (194-236)||(27270355-27270397)
chr4 (194-236)||(31664278-31664320)
chr4 (194-236)||(44134495-44134537)
chr4 (194-231)||(38141673-38141710)
[»] chr7 (8 HSPs)
chr7 (192-231)||(17166872-17166911)
chr7 (194-236)||(26873704-26873746)
chr7 (194-236)||(44724178-44724220)
chr7 (197-236)||(36675605-36675644)
chr7 (195-236)||(36358426-36358467)
chr7 (195-236)||(43859092-43859133)
chr7 (193-221)||(31292573-31292601)
chr7 (195-231)||(44468137-44468173)
[»] scaffold0131 (1 HSPs)
scaffold0131 (194-236)||(11168-11210)
[»] scaffold0014 (1 HSPs)
scaffold0014 (194-236)||(64935-64977)
[»] chr8 (11 HSPs)
chr8 (194-236)||(9830609-9830651)
chr8 (194-236)||(34934371-34934413)
chr8 (197-241)||(24797172-24797216)
chr8 (197-236)||(1183824-1183863)
chr8 (194-236)||(1098059-1098101)
chr8 (194-236)||(6316878-6316920)
chr8 (192-241)||(38567124-38567174)
chr8 (198-236)||(41838074-41838112)
chr8 (194-231)||(5590289-5590326)
chr8 (200-236)||(7012339-7012375)
chr8 (148-176)||(25383107-25383135)
[»] scaffold0050 (1 HSPs)
scaffold0050 (194-231)||(19052-19089)
[»] chr6 (4 HSPs)
chr6 (194-236)||(12698495-12698537)
chr6 (194-236)||(24130354-24130396)
chr6 (192-236)||(10290459-10290503)
chr6 (197-229)||(24635588-24635620)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 25707114 - 25706981
Alignment:
Q  18 caaaacagatgcagtatcagtattggtttctgtttataagtcattacatcaacaaattacttctgaagaaaaggtgagttggttccaccattttatttat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25707114 caaaacagatgcagtatcagtattggtttctgtttataagtcattacatcaacaaattacttctgaagaaaaggtgagttggttccaccattttatttat 25707015  T
Q  118 gttctgataaagtttaattaattttggcttaaat 151  Q
    ||||||||||||||||||||||||||||||||||    
T  25707014 gttctgataaagtttaattaattttggcttaaat 25706981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 43358453 - 43358411
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  43358453 gggtgggccgtggcccacctcagcccatgaagggctccgccac 43358411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 3631302 - 3631260
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  3631302 gggtgggccgtggcccaccccagcccatgaagggctccgccac 3631260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 9737821 - 9737863
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  9737821 gggtgggccgtggcccaccccagcccatgaagggctccgccac 9737863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 13013369 - 13013411
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  13013369 gggtgggccgtggcccaccccagcccatgaagggctccgccac 13013411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 19577294 - 19577336
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  19577294 gggtgggccgtggcccaccttagcccatgaagggctccgccac 19577336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 26525344 - 26525386
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  26525344 gggtgggccgtggcccaccccagcccatgaagggctccgccac 26525386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 26784955 - 26784913
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  26784955 gggtgggccgtggcccacctaagcccatgaagggctccgccac 26784913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 8074355 - 8074396
Alignment:
Q  195 ggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  8074355 ggtgggccgtggcccaccccagcccatgaagggctccgccac 8074396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 25701538 - 25701586
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctccaccacaggttctgc 245  Q
    |||||||||||||||| |||||||||||||||||| |||| || |||||    
T  25701538 tgggccgtggcccaccccagcccatgaagggctccgccactggctctgc 25701586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 29390311 - 29390275
Alignment:
Q  195 ggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    |||||||||||||||||| ||||||||||||||||||    
T  29390311 ggtgggccgtggcccaccccagcccatgaagggctcc 29390275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Complemental strand, 16823171 - 16823137
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctcc 231  Q
    |||||||||||||||| ||||||||||||||||||    
T  16823171 tgggccgtggcccaccccagcccatgaagggctcc 16823137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 28662160 - 28662118
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||| ||||||||| ||||    
T  28662160 gggtgggccgtggcccaccccagcccataaagggctccgccac 28662118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 43348677 - 43348635
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||| || |||||||||||||||||| ||||    
T  43348677 gggtgggccgtggcccgccccagcccatgaagggctccgccac 43348635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 6229073 - 6229109
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctc 230  Q
    |||||||| |||||||||| |||||||||||||||||    
T  6229073 gggtgggctgtggcccaccccagcccatgaagggctc 6229109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 38763757 - 38763715
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  38763757 gggtgggccgtggcccacctcagcccatgaagggctccgccac 38763715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 36436296 - 36436339
Alignment:
Q  193 tgggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  36436296 tgggtgggccgtggcccaccccagcccatgaagggctccgccac 36436339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 6750121 - 6750163
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  6750121 gggtgggccgtggcccaccccagcccatgaagggctccgccac 6750163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 28745609 - 28745651
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  28745609 gggtgggccgtggcccaccccagcccatgaagggctccgccac 28745651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 34983319 - 34983277
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  34983319 gggtgggccgtggcccaccccagcccatgaagggctccgccac 34983277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 38527217 - 38527175
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  38527217 gggtgggccgtggcccaccccagcccatgaagggctccgccac 38527175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 1021189 - 1021227
Alignment:
Q  198 gggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  1021189 gggccgtggcccaccccagcccatgaagggctccgccac 1021227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 2249624 - 2249582
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  2249624 gggtgggtcgtggcccaccccagcccatgaagggctccgccac 2249582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Complemental strand, 7366240 - 7366210
Alignment:
Q  148 aaatctcgcaaaatagacctatagtcgttga 178  Q
    |||||||||||||||||||||||||||||||    
T  7366240 aaatctcgcaaaatagacctatagtcgttga 7366210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 22674855 - 22674897
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||| ||||| |||||||||||||||||| ||||    
T  22674855 gggtgggccgtggtccaccccagcccatgaagggctccgccac 22674897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 23869706 - 23869664
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||    
T  23869706 gggtgggccgtggcccaccccagcccatggagggctccgccac 23869664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 42473604 - 42473567
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  42473604 gggtgagccgtggcccaccccagcccatgaagggctcc 42473567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 1115155 - 1115195
Alignment:
Q  196 gtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||| |||||||||||| |||||||||||||||||| ||||    
T  1115155 gtggaccgtggcccaccccagcccatgaagggctccgccac 1115195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 37125736 - 37125694
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  37125736 gggtgggccgtggcccacctcagcccatgaagggctccgccac 37125694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 6849796 - 6849754
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  6849796 gggtgggccgtggcccaccccagcccatgaagggctccgccac 6849754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 8530126 - 8530084
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  8530126 gggtgggccgtggcccaccccagcccatgaagggctccgccac 8530084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 9247014 - 9247056
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  9247014 gggtgggttgtggcccacctcagcccatgaagggctccaccac 9247056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 16693063 - 16693105
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  16693063 gggtgggccgtggcccaccccagcccatgaagggctccgccac 16693105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 17285408 - 17285450
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  17285408 gggtgggccgtggcccaccccagcccatgaagggctccgccac 17285450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 33012171 - 33012208
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  33012171 gggtgggccgtggcccaccccagcccatgaagggctcc 33012208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 24790480 - 24790436
Alignment:
Q  192 ctgggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||    
T  24790480 ctgggtgggtcgtggcccactccagcccatgaagggctccaccac 24790436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 29981824 - 29981863
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  29981824 tgggccgtggcccaccccagcccatgaagggctccgccac 29981863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 44052573 - 44052620
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccacaggtt 241  Q
    ||||| ||||||||||||| |||||||||||||||||| |||| ||||    
T  44052573 gggtgagccgtggcccaccccagcccatgaagggctccgccaccggtt 44052620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 919827 - 919861
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctcc 231  Q
    |||||||||||||||| ||||||||||||||||||    
T  919827 tgggccgtggcccaccccagcccatgaagggctcc 919861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 29169985 - 29169943
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||| |||||||||| |||||||||||||||||| ||||    
T  29169985 gggtgggctgtggcccaccccagcccatgaagggctccgccac 29169943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 178
Target Start/End: Original strand, 40428849 - 40428879
Alignment:
Q  148 aaatctcgcaaaatagacctatagtcgttga 178  Q
    |||||||||||||||||||||||||||||||    
T  40428849 aaatctcgcaaaatagacctatagtcgttga 40428879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 17879975 - 17880011
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctc 230  Q
    |||||||||||| |||||| |||||||||||||||||    
T  17879975 gggtgggccgtgacccaccccagcccatgaagggctc 17880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 37343067 - 37343027
Alignment:
Q  196 gtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||| ||| |||||||||||||||||| ||||    
T  37343067 gtgggccgtggccgaccccagcccatgaagggctccgccac 37343027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 42372015 - 42371971
Alignment:
Q  192 ctgggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||||| ||  |||||||||||||| ||||    
T  42372015 ctgggtgggccgtggcccaccccaatccatgaagggctccgccac 42371971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 1092993 - 1093030
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1092993 gggtgggccgtggcccacctcagcccatgaagggctcc 1093030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 18163761 - 18163719
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  18163761 gggtgggccgtggcccaccccagcccatgaagggctccgccac 18163719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 29126159 - 29126201
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  29126159 gggtgggccgtggcccaccccagcccatgaagggctccgccac 29126201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 50527749 - 50527791
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  50527749 gggtgggccgtggcccaccccagcccatgaagggctccgccac 50527791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 52571540 - 52571582
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  52571540 gggtgggccgtggcccaccccagcccatgaagggctccgccac 52571582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 16908924 - 16908960
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctc 230  Q
    ||||||||||||||||||| |||||||||||||||||    
T  16908924 gggtgggccgtggcccaccccagcccatgaagggctc 16908960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 2618925 - 2618886
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  2618925 tgggccgtggcccacctcaacccatgaagggctccgccac 2618886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 7160406 - 7160448
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||    
T  7160406 gggtgggccgtggcccaccccagcccatgaaaggctccgccac 7160448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 52202025 - 52201983
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||| |||||| |||||||||||||||||| ||||    
T  52202025 gggtgggccgtgacccaccccagcccatgaagggctccgccac 52201983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 7441702 - 7441735
Alignment:
Q  198 gggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||||||||||||| ||||||||||||||||||    
T  7441702 gggccgtggcccaccccagcccatgaagggctcc 7441735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 13594990 - 13595031
Alignment:
Q  195 ggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||||| |||||||||| ||||||| ||||    
T  13594990 ggtgggccgtggcccaccccagcccatgacgggctccgccac 13595031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 22729263 - 22729226
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  22729263 gggtgggccgtggcccaccccagcccattaagggctcc 22729226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 12251623 - 12251659
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctc 230  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  12251623 gggtgggccgtggtccaccccagcccatgaagggctc 12251659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 22647156 - 22647112
Alignment:
Q  192 ctgggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  22647156 ctggatgggccgtggcccacctcagcccatgaagggctccgccac 22647112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 2655025 - 2655067
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  2655025 gggtgggccgtggcccaccccagcccatgaagggctccgccac 2655067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 6755872 - 6755830
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  6755872 gggtgggccgtggcccaccccagcccatgaagggctccgccac 6755830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 36584467 - 36584425
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  36584467 gggtgggccgtggcccaccccagcccatgaagggctccgccac 36584425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 40228546 - 40228588
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  40228546 gggtgggccgtggcccaccccagcccatgaagggctccgccac 40228588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 44817664 - 44817706
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  44817664 gggtgggccgtggcccaccccagcccatgaagggctccgccac 44817706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 51001519 - 51001477
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  51001519 gggtgggccgtggcccaccccagcccatgaagggctccgccac 51001477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 18491228 - 18491188
Alignment:
Q  196 gtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  18491228 gtgggccgtggcccaccccagcccatgaagggctccgccac 18491188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 19653761 - 19653801
Alignment:
Q  196 gtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||| |||||||||||||||||| ||||    
T  19653761 gtgggccgtggcccaccccagcccatgaagggctccgccac 19653801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 11651085 - 11651123
Alignment:
Q  198 gggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  11651085 gggccgtggcccaccccagcccatgaagggctccgccac 11651123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 27270397 - 27270355
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||| |||||||||| |||||||||||||||||| ||||    
T  27270397 gggtgggctgtggcccaccccagcccatgaagggctccgccac 27270355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 31664278 - 31664320
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  31664278 gggtgggccgtggcccaccccatcccatgaagggctccgccac 31664320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 44134537 - 44134495
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||| |||||||||||| |||||||||||||||||| ||||    
T  44134537 gggtggaccgtggcccaccccagcccatgaagggctccgccac 44134495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 38141673 - 38141710
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    |||||||||||||||| || ||||||||||||||||||    
T  38141673 gggtgggccgtggccctccccagcccatgaagggctcc 38141710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Complemental strand, 17166911 - 17166872
Alignment:
Q  192 ctgggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  17166911 ctgggtgggccgtggcccaccccagcccatgaagggctcc 17166872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 26873746 - 26873704
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  26873746 gggtgggccgtggcccaccccagcccatgaagggctccgccac 26873704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 44724178 - 44724220
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  44724178 gggtgggccgtggcccaccccagcccatgaagggctccgccac 44724220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 36675605 - 36675644
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  36675605 tgggccgtggcccaccccagcccatgaagggctccgccac 36675644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 36358426 - 36358467
Alignment:
Q  195 ggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||| |||||||||||| |||||||||||||||||| ||||    
T  36358426 ggtggaccgtggcccaccccagcccatgaagggctccgccac 36358467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 43859133 - 43859092
Alignment:
Q  195 ggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||  ||||||||||||||||| ||||    
T  43859133 ggtgggccgtggcccaccctagcccatgaagggctccgccac 43859092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 31292601 - 31292573
Alignment:
Q  193 tgggtgggccgtggcccacctcagcccat 221  Q
    |||||||||||||||||||||||||||||    
T  31292601 tgggtgggccgtggcccacctcagcccat 31292573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 44468137 - 44468173
Alignment:
Q  195 ggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  44468137 ggtgggccgtggcccaccccagcctatgaagggctcc 44468173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 11210 - 11168
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  11210 gggtgggccgtggcccaccccagcccatgaagggctccgccac 11168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 64977 - 64935
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  64977 gggtgggccgtggcccaccccagcccatgaagggctccgccac 64935  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 9830651 - 9830609
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  9830651 gggtgggccgtggcccaccccagcccatgaagggctccgccac 9830609  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 34934371 - 34934413
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  34934371 gggtgggccgtggcccaccccagcccatgaagggctccgccac 34934413  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 24797172 - 24797216
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctccaccacaggtt 241  Q
    |||||||||||||||| |||||||||||||||||| |||| ||||    
T  24797172 tgggccgtggcccaccccagcccatgaagggctccgccactggtt 24797216  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 1183863 - 1183824
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  1183863 tgggccgtggcccaccccagcccatgaagggctccgccac 1183824  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 1098101 - 1098059
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||||||  |||||||||||||| ||||    
T  1098101 gggtgggccgtggcccacctcacgccatgaagggctccgccac 1098059  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 6316920 - 6316878
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||    
T  6316920 gggtgggccgtggcccaccccagcccatgaaaggctccgccac 6316878  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 38567174 - 38567124
Alignment:
Q  192 ctgggtgggccgtggccca-cctcagcccatgaagggctccaccacaggtt 241  Q
    ||||||||||||||||||| || |||||||||||||||||| |||| ||||    
T  38567174 ctgggtgggccgtggcccacccccagcccatgaagggctccgccactggtt 38567124  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 41838074 - 41838112
Alignment:
Q  198 gggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  41838074 gggccgtggcccaccccagcccatgaagggctccgccac 41838112  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 5590289 - 5590326
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  5590289 gggtgggccgtggcccaccccagcccattaagggctcc 5590326  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 7012375 - 7012339
Alignment:
Q  200 gccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  7012375 gccgtggcccaccccagcccatgaagggctccgccac 7012339  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 25383107 - 25383135
Alignment:
Q  148 aaatctcgcaaaatagacctatagtcgtt 176  Q
    |||||||||||||||||||||||||||||    
T  25383107 aaatctcgcaaaatagacctatagtcgtt 25383135  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 19089 - 19052
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctcc 231  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  19089 gggtgggccgtggcccaccccagcccatgaagggctcc 19052  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 12698537 - 12698495
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||| |||||||||||||| |||||||||||||||||| ||||    
T  12698537 gggtcggccgtggcccaccccagcccatgaagggctccgccac 12698495  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 24130354 - 24130396
Alignment:
Q  194 gggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    |||||||| |||||||||| |||||||||||||||||| ||||    
T  24130354 gggtgggcagtggcccaccccagcccatgaagggctccgccac 24130396  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 10290503 - 10290459
Alignment:
Q  192 ctgggtgggccgtggcccacctcagcccatgaagggctccaccac 236  Q
    ||||||||||| |||||||||  ||||||||||||||||| ||||    
T  10290503 ctgggtgggccatggcccaccctagcccatgaagggctccgccac 10290459  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 24635588 - 24635620
Alignment:
Q  197 tgggccgtggcccacctcagcccatgaagggct 229  Q
    |||||||||||||||| ||||||||||||||||    
T  24635588 tgggccgtggcccaccccagcccatgaagggct 24635620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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