View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10434_high_12 (Length: 241)
Name: NF10434_high_12
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10434_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 38508315 - 38508110
Alignment:
| Q |
18 |
ataagtgtgtatgtgaatactttacttaccataggttgtgtagacaattgtgcaagaaagcagtgtgtgtggacgataatttttggaaaaaataattaaa |
117 |
Q |
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| T |
38508315 |
ataagtgtgtatgtgaatactt-----accataggttgtgtagacaattgtgcaagaaagc----------gactataatttttggaaaaaataattaaa |
38508231 |
T |
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| Q |
118 |
tatgatttgatgatatatatttgcattgcaatacttcaaatggaaggttgtggtgttgttccttcacgagtaaccaatcattaatactttgatctcaagc |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38508230 |
tatgatttgatgatatatatttgtattgcaatacttcaaatggaaggttgtggtgttgttccttcacgagtaaccaatcatgaatactttgatctcaagc |
38508131 |
T |
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| Q |
218 |
agtctattgccaaggatcaaa |
238 |
Q |
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|||||||| ||||||||||| |
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| T |
38508130 |
agtctattttcaaggatcaaa |
38508110 |
T |
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