View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10434_high_2 (Length: 655)
Name: NF10434_high_2
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10434_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 16 - 563
Target Start/End: Original strand, 19620949 - 19621496
Alignment:
| Q |
16 |
tttttcaggttggcgaggctggtctttagaggtggcggttatcacgtgacacagtttataatgtttgaggagtgtaccagctactaacggcagcagaacc |
115 |
Q |
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| T |
19620949 |
ttttgcaggttggcgaggctggtctttagaggtggcagttatcacctgacacggtttataatgttttaggagtgtaccagctactaacggcagcagaacc |
19621048 |
T |
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| Q |
116 |
tcccaaatcgtgatgaatatcgtcatataatttggaataaaacaatacctttaaaagtaacaatttttgcgtggtggctatttcggaatcgtattgcaac |
215 |
Q |
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| T |
19621049 |
tcccaaatcgtgatgaatatcgtcatataatttggaataaaacaatacctttaaaagtaacaatttttgtgtggtggctatttcggaatcgtattgcaac |
19621148 |
T |
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| Q |
216 |
aaaagacaatttggtgcagcatgggaacatccaatcgaatcaaaatgtgtgtagttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaa |
315 |
Q |
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| T |
19621149 |
aaaagacaatttggtgcagcatgggaacatccaatcgaatcaaaatgtgtgtagttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaa |
19621248 |
T |
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| Q |
316 |
tgtaatcattttggcagcatttggcctctggttgcaatgactgggtatttcttttgtgaactccattcatctatttaagcatgtattaatgtttagctca |
415 |
Q |
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| T |
19621249 |
tgtaatcattttggcagcatttggcctctggttgcaatgacttggtatttcttttgtgaactccattcatctatttaagcatgtattaatgtttagctca |
19621348 |
T |
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| Q |
416 |
ttgtgttggttctctagacgaataaagtcttatgtgcatgtcatttggttagcttcagtgtgggtgaattggagatagcgtaattctcgtttgtttgagt |
515 |
Q |
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| T |
19621349 |
ttgtgtgggttctctagatgaataaagtcttatgtgcatgtcatttggttagcttcagtctgggtgaattggagataacgtagttctcgtttgtttgagt |
19621448 |
T |
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| Q |
516 |
aaaaggaggaagcaatgcataaactgcttgataaagttaaactacatt |
563 |
Q |
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| T |
19621449 |
aaaaggaggaagcaatgcataaactgcttgataaagttaaactacatt |
19621496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 41 - 555
Target Start/End: Original strand, 19615231 - 19615747
Alignment:
| Q |
41 |
ttagaggtggcggttatcacgtgacacagtttataatgtttgaggagtgtaccagctactaacggcagcagaacctcccaaatcgtgatgaatatcgtca |
140 |
Q |
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| T |
19615231 |
ttagaggtggcaatcatcatttgacacaatttaaaatgttcgaggagtgtaccagctactaacgggagcagaacctcccaa-tcgtgatgaatatcacga |
19615329 |
T |
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| Q |
141 |
tataatttggaataaaacaatacctttaaaagtaacaatttttgcgtggtggctatttcggaatcgtattgcaacaaaagacaatttggtgcagcatggg |
240 |
Q |
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| T |
19615330 |
tataatttggaataaaacaatacctttaaaagtaacaatttttgcgtggtttctatttcggaatcgtattgcaatgaaagataatatgatgcagcatggg |
19615429 |
T |
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| Q |
241 |
aacatccaatcgaatcaaaatgtgtgtagttacaggtgttgtcaagctgaaccaatcgatcatttgttctttgaatgtaatcattttggcagcatttggc |
340 |
Q |
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| T |
19615430 |
atcatccaatcgaatcaaaatgtgtgtagttacgggtgtggtcaagctaaaccaatcaatcattcgttctttgaatatagtcattttggcagcatttggt |
19615529 |
T |
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| Q |
341 |
ctctgg--ttgcaatgactgggtatttcttttgtgaactccattcatctatttaagcatgtattaatgtttagctcattgtgttgg-ttctctagacgaa |
437 |
Q |
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| T |
19615530 |
ctctggttttgcaatggctgggtatttgttttgtgaactccattcatttgtttgggcatgtattaatgtttagttcgttgtgtgggtttctctagaagaa |
19615629 |
T |
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| Q |
438 |
taaagtcttatgtgcatgtcatttggttagcttcagtgtgggtgaattggagatagcgtaattctcgtttgtttgagtaaaaggaggaagcaatgcataa |
537 |
Q |
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| T |
19615630 |
taaagttgtttatgcatgttatttggttagattcatagtaggtgatatggagagagcgtaattctcgtttgcttaagtgaaaggagaagggaatgcataa |
19615729 |
T |
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| Q |
538 |
actgcttgataaagttaa |
555 |
Q |
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| T |
19615730 |
actgcttggtaaagttaa |
19615747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 611 - 642
Target Start/End: Original strand, 19621544 - 19621575
Alignment:
| Q |
611 |
actatgtctattgtaattacttttggttctct |
642 |
Q |
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| T |
19621544 |
actatgtctattgtaattacttttggttctct |
19621575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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