View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10434_high_5 (Length: 347)
Name: NF10434_high_5
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10434_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 46662721 - 46662378
Alignment:
| Q |
1 |
gacaaccaatacaaggttttacaaaaatcaatacaagaaaattgctcatccatataaggctggattatatgagtcgtatattgttttgagggatgaacaa |
100 |
Q |
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| T |
46662721 |
gacaaccaatacaaggttttacaaaaatcaatacaagaaaattgctcatccatataaggctggattatatgagtcgtatattgttttgagggatgaacaa |
46662622 |
T |
|
| Q |
101 |
aagcaagtatggaaattatcatcaaatatagcatcagtgtaaaaccctaaccatcaattatgtaacatttatttctgaaaattctaaattactaaatctt |
200 |
Q |
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| T |
46662621 |
aagcaagtatggaaattatcatcaaatatagcatcagtgtaaaaccctaaccatcaactatgtaacatttatttctgaaaattctaaattactaaatctt |
46662522 |
T |
|
| Q |
201 |
at--ggcgctaatcagccacaaacaacacaagtaaaagaccgtagaaagaaagaaaaaactaatcatagcaaccagtaagattatttcatggaatattgg |
298 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
46662521 |
atcgagcgctaatcagccacaaacaacacaagtaaaagaccgtagaaagaaagaaaaaactaatcatagtaaccagtaagattatttcatggaatgttgg |
46662422 |
T |
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| Q |
299 |
cgaaattcataaaaggagcagcacaaacaacctgatgatatccc |
342 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
46662421 |
cgaaattcataaaaggcgcagcacaaacaacctgatgatatccc |
46662378 |
T |
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