View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10434_high_9 (Length: 253)

Name: NF10434_high_9
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10434_high_9
NF10434_high_9
[»] chr5 (3 HSPs)
chr5 (24-105)||(40640268-40640349)
chr5 (33-105)||(32361829-32361901)
chr5 (33-105)||(32379060-32379132)
[»] chr4 (4 HSPs)
chr4 (6-105)||(38507769-38507867)
chr4 (28-105)||(30161971-30162048)
chr4 (34-105)||(55290067-55290138)
chr4 (139-242)||(38507627-38507728)
[»] chr8 (5 HSPs)
chr8 (28-105)||(31877212-31877289)
chr8 (33-105)||(31547809-31547881)
chr8 (34-105)||(31544656-31544727)
chr8 (34-105)||(31559518-31559589)
chr8 (34-105)||(31556512-31556583)
[»] chr7 (2 HSPs)
chr7 (33-105)||(30034438-30034510)
chr7 (34-105)||(45868103-45868174)
[»] chr2 (6 HSPs)
chr2 (33-105)||(18229431-18229503)
chr2 (34-105)||(6493518-6493589)
chr2 (34-105)||(8328455-8328526)
chr2 (34-105)||(9596926-9596997)
chr2 (34-105)||(33994624-33994695)
chr2 (34-105)||(21281553-21281623)
[»] chr1 (2 HSPs)
chr1 (33-105)||(38624995-38625067)
chr1 (33-105)||(46613935-46614007)
[»] chr3 (2 HSPs)
chr3 (34-105)||(32053544-32053615)
chr3 (28-105)||(50683113-50683190)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 40640349 - 40640268
Alignment:
Q  24 ttaccatcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640349 ttaccatcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 40640268  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 32361901 - 32361829
Alignment:
Q  33 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361901 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 32361829  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 32379132 - 32379060
Alignment:
Q  33 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379132 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 32379060  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 38507867 - 38507769
Alignment:
Q  6 actaaaagtaataaagttttaccatcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||| | |||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507867 actaaaagaagtaaagtgttaacatc-agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 38507769  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 30161971 - 30162048
Alignment:
Q  28 catcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30161971 catcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 30162048  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 55290138 - 55290067
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290138 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 55290067  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 38507728 - 38507627
Alignment:
Q  139 aactatgaatcgctttgctatgatcgcactacattggttgaaacttgaaacnnnnnnnnctgtaaattataatttgctatactttattttctcttttctg 238  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  38507728 aactatgaatcgctttgctatgatcgc--tacattggttgaaacttgaaacttttttttctgtaaattataatttgctatactttattttctcttttctg 38507631  T
Q  239 tgct 242  Q
    ||||    
T  38507630 tgct 38507627  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 31877289 - 31877212
Alignment:
Q  28 catcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877289 catcaagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31877212  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 31547809 - 31547881
Alignment:
Q  33 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547809 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31547881  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 31544656 - 31544727
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544656 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31544727  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 31559518 - 31559589
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 31559589  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 31556512 - 31556583
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  31556512 gcggggatagctcagttgggagagcgtcagattgaagatctgaaggtcgcgtgtttgatccacgctcaccgc 31556583  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 30034510 - 30034438
Alignment:
Q  33 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034510 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 30034438  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 45868174 - 45868103
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868174 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 45868103  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 18229431 - 18229503
Alignment:
Q  33 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229431 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 18229503  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 6493518 - 6493589
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493518 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 6493589  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 8328526 - 8328455
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328526 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 8328455  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 9596926 - 9596997
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596926 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 9596997  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 33994695 - 33994624
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994695 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 33994624  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 21281623 - 21281553
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| |||||||||    
T  21281623 gcggggatagctcagttgggagagcctcaga-tgaagatccgaaggtcgcgtgtttgatccatgctcaccgc 21281553  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 38625067 - 38624995
Alignment:
Q  33 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625067 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 38624995  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 46613935 - 46614007
Alignment:
Q  33 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46613935 agcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 46614007  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 32053615 - 32053544
Alignment:
Q  34 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053615 gcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 32053544  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 50683190 - 50683113
Alignment:
Q  28 catcgagcggggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 105  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50683190 catcaagctgggatagctcagttgggagagcgtcagactgaagatctgaaggtcgcgtgttcgatccacgctcaccgc 50683113  T

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