View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10434_low_10 (Length: 284)
Name: NF10434_low_10
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10434_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 36672063 - 36671799
Alignment:
| Q |
1 |
cgtgaagagaaaagagcgagagaagaaggtaacgatgaaattagggtttctgttttgtttttcagttgaattgagttatgacaatatgaaataatcgatg |
100 |
Q |
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| T |
36672063 |
cgtgaagagaaaagagcgagagaagaaggtaacgatgaaattagggtttctgttttgtttttcagttgaattgatttatgaaaatatgaaataatcgatg |
36671964 |
T |
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| Q |
101 |
attttgtgaaattaagggtaaagcgtcgtcgtcgaagaagagcaaaagcatcgccgatgaaacttccggtgccggtgagaagcttccctatgttcatgtt |
200 |
Q |
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| T |
36671963 |
attttctgaaattaagggtaaagcgtcgtcgtcgaagaagagcaaaagcatcgccgatgaaacttccggtgccggtgagaagcttccctatgttcatgtt |
36671864 |
T |
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| Q |
201 |
cgcgttcgacgaggtcaagctactgatagccatagcttagcagaacgagtaaccttctcactaat |
265 |
Q |
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| T |
36671863 |
cgcgttcgacgaggtcaagctactgatagccatagcttagcagaacgagtaaccttctcactaat |
36671799 |
T |
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Back To:
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 21509021 - 21509085
Alignment:
| Q |
181 |
agcttccctatgttcatgttcgcgttcgacgaggtcaagctactgatagccatagcttagcagaa |
245 |
Q |
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||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21509021 |
agcttccgtacgttcacgttcgagttcgacgaggtcaagctactgatagccatagcttagcagaa |
21509085 |
T |
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