View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10434_low_11 (Length: 270)
Name: NF10434_low_11
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10434_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 21203815 - 21204056
Alignment:
| Q |
22 |
tagactcaaatccattggcatataaattctatgccctggtttatgcatgttttccttgttgaagtcctataaaggtagcgaaagtcacatcacatgatta |
121 |
Q |
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| T |
21203815 |
tagactcaaatccattggcatataaattctatgccctagtttatgcatgttttccttgttgaagtcctataaaggtagcgaaagtcacatcacattatta |
21203914 |
T |
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| Q |
122 |
attggtattcact-attccttacaaacatttgaaaccgaatgctttgatcg-aattaaacaatgtaccatgtaaacttttccaccataaacttgcgccac |
219 |
Q |
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| T |
21203915 |
attggtattcactaattccttacaaacatttgaaaacgaatgctttggtcgaaattaaacaatgtaccatgtaaacttttccaccataaacttgcgccac |
21204014 |
T |
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| Q |
220 |
gcgatcttgaagacctgcaactatctcaagttctttctctgc |
261 |
Q |
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| T |
21204015 |
gcgatcttgaagacctgcaactatctcaagttctttctctgc |
21204056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 261
Target Start/End: Original strand, 274360 - 274592
Alignment:
| Q |
23 |
agactcaaatccattggcatataaattctatgccctggtttatgcatgttttccttgttgaagtcctataaaggtagcgaaagtcacatcacatgattaa |
122 |
Q |
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||||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||||||||||||| | || ||||||| |||||||||||||| |
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| T |
274360 |
agactcaaatccattggtatataaattccatgccctagtttatccatgttttccttgttgaagtcctataaaagcagagaaagtcgcatcacatgattaa |
274459 |
T |
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| Q |
123 |
ttggtattcactattccttacaaacatttgaaaccgaatgctttgatcgaa-ttaaacaatgtaccatgtaaacttttccaccataaacttgcgccacgc |
221 |
Q |
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| T |
274460 |
taggtattcatgat-------aaacatttgaaaacgaatgctttgatcgaaattaaacaatgtaccatgtaaactagtccaccataaacttgcgccaccc |
274552 |
T |
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| Q |
222 |
gatcttgaagacctgcaactatctcaagttctttctctgc |
261 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |
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| T |
274553 |
gatcttgaagacctgcaactattccaagttctttctctgc |
274592 |
T |
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