View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10434_low_18 (Length: 224)

Name: NF10434_low_18
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10434_low_18
NF10434_low_18
[»] chr5 (3 HSPs)
chr5 (5-95)||(1414621-1414711)
chr5 (143-224)||(1414492-1414573)
chr5 (5-83)||(1415216-1415294)


Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 1414711 - 1414621
Alignment:
Q  5 cactttcagtgtcttctacatcgtgatataaagcccggaaacattttaatgggttttcggcataatgcaaataaggtatgatacatatctt 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1414711 cactttcagtgtcttctacatcgtgatataaagcccggaaacattttaatgggttttcggcataatgcaaataaggtatgatacatatctt 1414621  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 1414573 - 1414492
Alignment:
Q  143 cgatatcattaacaagaaaaaatgtcactttgttaaatgtttttatttataccggaaaataaaaaatggaagtagaaaacca 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1414573 cgatatcattaacaagaaaaaatgtcactttgttaaatgtttttatttttaccggaaaataaaaaatggaagtagaaaacca 1414492  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 1415294 - 1415216
Alignment:
Q  5 cactttcagtgtcttctacatcgtgatataaagcccggaaacattttaatgggttttcggcataatgcaaataaggtat 83  Q
    ||||||||| |||||||||||||||||||||||||   ||||||| ||||||||||  | |||||||||| ||||||||    
T  1415294 cactttcagggtcttctacatcgtgatataaagcctaaaaacattctaatgggtttaggccataatgcaattaaggtat 1415216  T

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