View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10434_low_4 (Length: 478)
Name: NF10434_low_4
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10434_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 461
Target Start/End: Original strand, 45270313 - 45270755
Alignment:
| Q |
19 |
ctgcccaagtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacct |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45270313 |
ctgcccaagtaagacctaactgtgaatttttcagggaccaatgctgcttctgggatgatattgcagtcctggataacaataccagtattcatattcacca |
45270412 |
T |
|
| Q |
119 |
gcggtgatccgtctgcgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45270413 |
gcggtgatccgtctgcgacaattacgttgtattcattatgatcataattgccttttctcacgatgatggtagagctttggatcaaggtggcagatgttcc |
45270512 |
T |
|
| Q |
219 |
aaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaaccc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45270513 |
aaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaaccc |
45270612 |
T |
|
| Q |
319 |
accaaagcagacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaacccca |
418 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45270613 |
accaaagcagacatatctcctatgtttctaaatgccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaacccca |
45270712 |
T |
|
| Q |
419 |
ttgcggtgttggctgcattcatggataatcaattaattagtaa |
461 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
45270713 |
ttgcggtgttggctgcatgcatggatgatcaattaattagtaa |
45270755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 45282089 - 45282542
Alignment:
| Q |
19 |
ctgcccaagtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacct |
118 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| | |
|
|
| T |
45282089 |
ctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcg |
45282188 |
T |
|
| Q |
119 |
gcggtgatccgtctgcgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttcc |
218 |
Q |
| |
|
|||||||||||| |||| |||| ||| ||| || || ||||| || ||||| |||||| |||||||||||||||||||| ||| |
|
|
| T |
45282189 |
tgtctgatccgtctgcagtaattgtgttgaattgccctttgccag----gc--tttcttacaatgattgtagagtgttggatcaaggtagcagatgatcc |
45282282 |
T |
|
| Q |
219 |
aaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaaccc |
318 |
Q |
| |
|
|||||||||||||| |||||| |||| || ||| ||||||||| | || |||||| ||||||| ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
45282283 |
aaagatgaagtcaacggtacccgagacaagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaaccc |
45282382 |
T |
|
| Q |
319 |
accaaagcagacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaacccca |
418 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45282383 |
accaaagcagacatatctccttggtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaacccca |
45282482 |
T |
|
| Q |
419 |
ttgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggct |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45282483 |
ttgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggct |
45282542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 478
Target Start/End: Original strand, 45273845 - 45274299
Alignment:
| Q |
19 |
ctgcccaagtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattcatattcacct |
118 |
Q |
| |
|
|||||||||||||||| |||||||||| |||| || | ||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| | |
|
|
| T |
45273845 |
ctgcccaagtaagaccgaattgtgaatctttctgggaacaatgctgcttctgggatgatattgcaatcctggatcacaataccagtattcaaattcatcg |
45273944 |
T |
|
| Q |
119 |
gcggtgatccgtctgcgacaattacgttgtattcatttttatcataattgccttttctcacgatgatggtagagctttggatcaaggtagcagatgttcc |
218 |
Q |
| |
|
||||||||||||| |||| |||| ||| ||| || || ||||| || ||||| |||||| |||||||||||||||||||| ||| |
|
|
| T |
45273945 |
tgtctgatccgtctgcggtaattgtgttgaattgccctttgccag----gc--tttcttacaatgattgtagagtgttggatcaaggtagcagatgatcc |
45274038 |
T |
|
| Q |
219 |
aaagatgaagtcaatggt-accggagataacacagttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacc |
317 |
Q |
| |
|
|||||||||||||| ||| ||| |||| || ||| ||||||||| | ||||||||| ||||||| ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
45274039 |
aaagatgaagtcaacggttaccagagacaagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacc |
45274138 |
T |
|
| Q |
318 |
caccaaagcagacatatctcctacgtttctaaatgccacggcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaacccc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274139 |
caccaaagcagacatatctcctacgtttctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccct |
45274238 |
T |
|
| Q |
418 |
attgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcacattggct |
478 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45274239 |
attgcggtgttggctgcacgcatggataatcaattaattagtaatttcgatcacactggct |
45274299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 173 - 472
Target Start/End: Original strand, 45293577 - 45293876
Alignment:
| Q |
173 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
272 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
45293577 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45293676 |
T |
|
| Q |
273 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacggcttggtgaccatca |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || |
|
|
| T |
45293677 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagca |
45293776 |
T |
|
| Q |
373 |
ggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcaca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45293777 |
ggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcaca |
45293876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 173 - 472
Target Start/End: Original strand, 45302537 - 45302836
Alignment:
| Q |
173 |
ttctcacgatgatggtagagctttggatcaaggtagcagatgttccaaagatgaagtcaatggtaccggagataacacagttgcggtagaattgcctgtt |
272 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
45302537 |
ttcttacgatgatcgtagagtcttggatcaaggtggcagatgttccaaagatgaaatcaacggtaccagagataacacaattgcggtagaattgcctgtt |
45302636 |
T |
|
| Q |
273 |
ggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctacgtttctaaatgccacggcttggtgaccatca |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || |
|
|
| T |
45302637 |
ggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttctaaatgccacagcttggtgaccagca |
45302736 |
T |
|
| Q |
373 |
ggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaattaattagtaatttcgatcaca |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45302737 |
ggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatcaattaattagtaacttcgatcaca |
45302836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 45293429 - 45293519
Alignment:
| Q |
19 |
ctgcccaagtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca |
109 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| |||||||||||||||| |
|
|
| T |
45293429 |
ctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca |
45293519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 45302389 - 45302479
Alignment:
| Q |
19 |
ctgcccaagtaagacctaattgtgaatttttcaggtaccaatgctgcttctgggacgatattgcagtcctggataacaataccagtattca |
109 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| ||| | |||||||||||||||||| ||||||||| | ||||| |||||||||||||||| |
|
|
| T |
45302389 |
ctgcccaagtaagatttaattgtgaatctttgagggaacaatgctgcttctgggacaatattgcagccttggatcacaataccagtattca |
45302479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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