View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10434_low_8 (Length: 341)
Name: NF10434_low_8
Description: NF10434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10434_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 10305882 - 10306207
Alignment:
| Q |
1 |
tcaccaattattattctagcatacaaatttgcacatggagaaactaatacgttcgtggcaaaacaacactcaaatcacaaagtggcaccagtctattaga |
100 |
Q |
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| T |
10305882 |
tcaccaattattattctagcatacaaatttgcacatggagaaactaatacattcgtggcaaa-caacactcaaatcacaaagtggcaccagtctattaga |
10305980 |
T |
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| Q |
101 |
acttctgtttcatcaatcctcagcaatagctgctgccatctaaaaatcatcaccaaaaccaaattattataaaacaatgcaaggtttggtccttttaaga |
200 |
Q |
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| T |
10305981 |
acttctgtttcatcaatcctcaccaatagctgctgccatctaaaaatcatcaccaaaaccaaattattataaaacaatgcgaggtttggtccttttaaga |
10306080 |
T |
|
| Q |
201 |
ggctagagatgttactccaatggaataaatttccaaccactatacacctgagaggtgtcatgaaacatagaagacgaaggacaataaccgattactgtga |
300 |
Q |
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| T |
10306081 |
ggctagagatgttactccaatggaataaatttccaaccactatacacctgagagatttcatgaaacatagaagacgaaggacaataaccgattactgtaa |
10306180 |
T |
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| Q |
301 |
aatactaacattaccactactgcattt |
327 |
Q |
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| T |
10306181 |
aatactaacattagtactactgtattt |
10306207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 33564487 - 33564447
Alignment:
| Q |
3 |
accaattattattctagcatacaaatttgcacatggagaaa |
43 |
Q |
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| T |
33564487 |
accaattattattctagcatacaaatttgcacatggagaaa |
33564447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 251
Target Start/End: Original strand, 1067165 - 1067198
Alignment:
| Q |
218 |
caatggaataaatttccaaccactatacacctga |
251 |
Q |
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| T |
1067165 |
caatggaataaatttccaaccactatacatctga |
1067198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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