View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10435_high_1 (Length: 420)
Name: NF10435_high_1
Description: NF10435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10435_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 43357137 - 43357548
Alignment:
| Q |
1 |
tcagaatatccttcacctggtacaaagaatgcagaattacatctgttagtgttgccttttgtattctctagcacattgaaattcatggggtagatgttgc |
100 |
Q |
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| T |
43357137 |
tcagaatatccttcacctggtacaaagaatacagaattacatctgttagtgttgccttttgtattctctagcacattgaaattcatggggtagatgttgt |
43357236 |
T |
|
| Q |
101 |
attgttcttgtttagcaaaggtttgcagttgctgcagttcctttgagttttctctgacatccattgttgatgttgaatgaggaggaacattacacaaagg |
200 |
Q |
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| T |
43357237 |
attgttcttgtttagcaaaggtttgcagttgctgcagttcctttgagttttctctgacatccattgttgatgttgaatgaggaggaacattacacaaagg |
43357336 |
T |
|
| Q |
201 |
tgtttatatatacgaggattgagtgcagtactggtcctgaaatgtcataatgaggaccgttataaaacgaagaaaacgtagaaagcaaaagttatgaggt |
300 |
Q |
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| T |
43357337 |
tgtttatatatacgaggattgagtgcagtactggtcctgaaatgtcataatgaggaccgttataaaacgaagaaaacgtagaaagcaaaagttatgaggt |
43357436 |
T |
|
| Q |
301 |
aattatgataataattcaattggaccctggttttggaaatttgagtaaggtcgcatccttcttttgaagtgtttgttattatggccccatgacactgctg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43357437 |
aattatgataataattcaattggaccctggttttggaaatttgagtaaggtcgcatccttcttttgaag----tgttattatggccccatgacactgctg |
43357532 |
T |
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| Q |
401 |
ttttactatatttgac |
416 |
Q |
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|||||||||||||||| |
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| T |
43357533 |
ttttactatatttgac |
43357548 |
T |
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