View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10435_low_1 (Length: 509)
Name: NF10435_low_1
Description: NF10435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10435_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 5129760 - 5129276
Alignment:
| Q |
15 |
agaagaaggttggagagtatggaaccaaggagagaatacttgaccacatcaattttgttattgctaagtgcaaatattgcaatgatgagttctgtagcat |
114 |
Q |
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| T |
5129760 |
agaagaaggttggagagtatggaaccaaggagagaatacttgaccacatcaattttgttattgctaagtgcaaatattgcaatgatgagttctgtagcat |
5129661 |
T |
|
| Q |
115 |
tcccacatgttgcattcaaaagtcctcccactatgattcaaaatattataattaaaaactttagtatcataagctagcatttaagaaaatttgcaattat |
214 |
Q |
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| T |
5129660 |
tcccacatgttgcattcaaaagtcctcccactatgattcaaaatattacaattaaaaactttagtatcataagctagcgtttaagaaaatttgcaattat |
5129561 |
T |
|
| Q |
215 |
aatttatatagaacttttatttcaaataatatgaattgacatatatcatatgcttagtctgaataatcaaca-nnnnnnnaatgaaatttggactgcaac |
313 |
Q |
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| T |
5129560 |
aatttatatagaacttttatttcaaataatatgaattgacatgtatcatatgcttagtctgaataatcaacattttttttaatgaaatttggactgcaac |
5129461 |
T |
|
| Q |
314 |
atcaatgtttttaatgtctcggtaaatgcaatcacacggattgcaatcaaagtcgcgtcagctgtattttagcacgatattttgtggtactaacgatcgt |
413 |
Q |
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| T |
5129460 |
atcaatgtttttaatgtctcggtaaatgcaatcacacggattgcaatcaaagtcgcgtcagctgtattttagcacgatattttgtggtactaacgatcgt |
5129361 |
T |
|
| Q |
414 |
gatgcgaccgtga-nnnnnnnnnaggaatgatgcgaccgtgatttaaaaccttgataattaaaaatataggggatgtagtttgtg |
497 |
Q |
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| T |
5129360 |
gatgcgaccgtgattttttttttaggaatgatgcgaccgtgatttaaaaccttgataattaacaatataggggatgtaatttgtg |
5129276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 25015028 - 25015155
Alignment:
| Q |
15 |
agaagaaggttggagagtatggaaccaaggagagaatacttgaccacatcaattttgttattgctaagtgcaaatattgcaatgatgagttctgtagcat |
114 |
Q |
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||||||||||| || || |||||||| | |||||||||||||| ||| |||||| ||| ||||||| ||||||||||| ||||| || || ||| || |
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| T |
25015028 |
agaagaaggtttgaaaggatggaacctaaaagagaatacttgacaacagcaatttggttgctgctaagagcaaatattgctatgatcagctcagtaatat |
25015127 |
T |
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| Q |
115 |
tcccacatgttgcattcaaaagtcctcc |
142 |
Q |
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| T |
25015128 |
tcccacatgttgcattaagaagtcctcc |
25015155 |
T |
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