View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_high_5 (Length: 449)
Name: NF10436_high_5
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 25 - 438
Target Start/End: Complemental strand, 662173 - 661765
Alignment:
| Q |
25 |
cacagagtttagagctattggcattaa-tatcaaatttccagcaacactttcttcatgcattatgtgtttttaacatagagaaactgccttttttcttgt |
123 |
Q |
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| T |
662173 |
cacagagtttagaactattggcattaaatatcaaatttccagcaacactttcttcatgcattaagtgtttttaacatagagaaactgccttttttcttat |
662074 |
T |
|
| Q |
124 |
attgcttgtaacatgctaagacataataacacaatggcaggaattctagagatacacacgtacggatgtcatgataaatatgctttacctttttaattta |
223 |
Q |
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| T |
662073 |
attgcttgtaacatgctaagacataataacacaatggcaggaattctagagatacacacg----gatgtcatgataaatatgctttacctttttaattta |
661978 |
T |
|
| Q |
224 |
taataaccacaattaataatttgctactgcttttgtgttcacacattttgtactaactagtttattcattcatgcatgtgttttagccagtcacaagtag |
323 |
Q |
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| T |
661977 |
taataaccacaattaataatttgctactgcttttgtgttcacacattttgtactaactagtttattcattcatgcatgtgttttagccagt--caagtag |
661880 |
T |
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| Q |
324 |
tcgacaaaataatgtaaaatctgaaaatgatgttccaattatatgagagagagaggaaataatggacacgagtcacgcggataggatatatcttgagcat |
423 |
Q |
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| T |
661879 |
tcgacaaaataatgtaaaatctgaaaatgatgttgcaattatatgagagagagaggaaataatggacacgagtcacgcggataggatatatcttgagcat |
661780 |
T |
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| Q |
424 |
ataatacacaccttt |
438 |
Q |
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| T |
661779 |
ataatacacaccttt |
661765 |
T |
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