View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10436_high_6 (Length: 436)
Name: NF10436_high_6
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 3747934 - 3747526
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3747934 |
ataccaacacttagtgtcttggttttgcggaacaacaaattccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
3747835 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3747834 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaaatatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcgga |
3747735 |
T |
|
| Q |
218 |
atttatccccacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatc |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3747734 |
atttatcccgacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatc |
3747635 |
T |
|
| Q |
318 |
ttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaacg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3747634 |
ttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaaca |
3747535 |
T |
|
| Q |
418 |
atctctctg |
426 |
Q |
| |
|
||||||||| |
|
|
| T |
3747534 |
atctctctg |
3747526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 5557952 - 5557544
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || |||||||| || ||||||||| |||||| | |||||||||||||||||||||||||| |
|
|
| T |
5557952 |
ataccaacacttagtgttttggttttgcggaacaacatattgcatggttcaatagaatgttcacattcactcgaaaataagccttggaaaatgattcaaa |
5557853 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
|||| || ||||||||||||||||||||||| || ||| ||||||| ||||||||| ||||||||||||||| || ||| ||| ||||| |||||||||| |
|
|
| T |
5557852 |
ttgttgatattgctttcaacaatttcaatgggaagctacctgaaaaatatttcacatcatgggaaagaatgaagcgtgaagaaaatgataatgtatcaga |
5557753 |
T |
|
| Q |
218 |
atttatccccacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatc |
317 |
Q |
| |
|
||| ||| ||||| ||| |||| ||||||| || ||||||| ||| |||||||||||||||| | | |||||||| ||||||||||||||||| |
|
|
| T |
5557752 |
ctttgtccacacaggggattcattattatcatattaccaggatagtgcgacagtttccaataaaggtcgacaaatggagttggttaaaattctaacaata |
5557653 |
T |
|
| Q |
318 |
ttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaacg |
417 |
Q |
| |
|
|| ||| ||||||| |||||||| |||||||||||||||||||| || | ||||||||| | ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5557652 |
tttacaaccattgacttctcatccaatcattttgaaggaccaataccagatgtgctaatggacttcaaagcaatccatgttctcaacttttcaaacaatg |
5557553 |
T |
|
| Q |
418 |
atctctctg |
426 |
Q |
| |
|
|||||||| |
|
|
| T |
5557552 |
ctctctctg |
5557544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 5849233 - 5849633
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || ||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
5849233 |
ataccaacacttagtgtcttggttttgcggaacaatagattgcatggttccatagaatgttcacattcactagaaaataagccttggaaaatgattcaaa |
5849332 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
5849333 |
ttgtggacattgctttgaacaatttcaatggaaaaataccagaaaaatatttcatgacatgggaaagaatgatgcatgatgaaaatgattctatatcaga |
5849432 |
T |
|
| Q |
218 |
atttatccccacagtgg---aggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaaca |
314 |
Q |
| |
|
|| ||| || ||| || || || ||||||| || ||||||||||| |||||||||||||||||| | || ||| | |||||||||| | |
|
|
| T |
5849433 |
cttcatctacagcatgggaaagaacttttactcatattaccaagatagtgtgaccgtttccaataaaggtcaaaaaattaagtaggaaaaaattctaaaa |
5849532 |
T |
|
| Q |
315 |
atcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaaca |
414 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
5849533 |
atctttacagccattgatttctcatccaatcatttcgaaggaccaataccagagttgctaatgaaatttaaggcaatccatgttctcaacttttcaaaca |
5849632 |
T |
|
| Q |
415 |
a |
415 |
Q |
| |
|
| |
|
|
| T |
5849633 |
a |
5849633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 5887458 - 5887855
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| ||||||||| || |||||||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
5887458 |
ataccaacacttagtgtcttggttttgcgaaacaataaatttcatggttccatagaatgttcagattctctagaaaataagccttggaaaatgattcaaa |
5887557 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||| ||||||||| ||||||||||||||||||| |||||| | ||| |||||| |
|
|
| T |
5887558 |
ttgtggacattgctttcaacaatttcaatggaaaaataccagaaaaatatttcacaacatgggaaagaatgatgcaagatgaaaacgatttgaaatcaga |
5887657 |
T |
|
| Q |
218 |
atttatccccacagtggaggca--ttcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaa |
315 |
Q |
| |
|
|| || ||| | || | ||| | ||||||| || ||||||||||| |||||||||||||||||||| | ||| || |||||||||||||| |
|
|
| T |
5887658 |
cttcat--ccatatgagatttaacttcttctcatattaccaagatagtgtgacagtttccaataaaggtcaagaacttaagtatgataaaattctaacaa |
5887755 |
T |
|
| Q |
316 |
tcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
415 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| ||| || | |||||||||||||| |||||| ||| |||| |||||||||||||||| |
|
|
| T |
5887756 |
tctttacagccattgatttctcatccaatcattttgaaggacaaataccagacgtgctaatgaaatttaaagcactccttgttttcaacttttcaaacaa |
5887855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 5563746 - 5563329
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | || ||||||||| || |||||||||| ||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
5563746 |
ataccaacacttagtgtcttggttttgcggaacaatagattgcatggttccatagaatgttcactctcactggcaaaaaagccttggaaaaggattcaaa |
5563647 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
|| ||||||| |||||||||||||||| |||||||||| ||||| | ||||||| ||||||||||||||||| || || || |||||| || |||||| |
|
|
| T |
5563646 |
ttttggacatggctttcaacaatttcagtggaaaactacctgaattttttttcacaacatgggaaagaatgatgaataataaagatgatggtgaatcaga |
5563547 |
T |
|
| Q |
218 |
atttatccccacagtgga---ggcattca------acccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaatt |
308 |
Q |
| |
|
|||||| || || ||| || | ||| || |||||||||| |||||| |||| ||||||| |||||||||| | || ||||| ||||||||| |
|
|
| T |
5563546 |
ctttatctacataggggaccgggaactcacatcgtactcatattatcaggatagtatgacagtttccattaaaggtcaacagatagagttggttaaaatt |
5563447 |
T |
|
| Q |
309 |
ctaacaatcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaactttt |
408 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| |||||||||||||||||| | || || ||||| ||| | ||||||||| | ||||||||||||||| |
|
|
| T |
5563446 |
ttaaaaatcttcacagccattgatttatcatccaatcattttgaaggaccactaccaaatgtgctgatggacttcaaagcactttatgttctcaactttt |
5563347 |
T |
|
| Q |
409 |
caaacaacgatctctctg |
426 |
Q |
| |
|
||||||| | |||||||| |
|
|
| T |
5563346 |
caaacaatgctctctctg |
5563329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 5896303 - 5896706
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactt---tcactagcaaataagccttggaaaatgattc |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
5896303 |
ataccaacacttagtgtattggttttgcggaacaacaaacttcatggttccatagaatgttcacatcattcactagaaaataagccttggaaaatgattc |
5896402 |
T |
|
| Q |
115 |
aaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| || || || ||||||||| ||||| | |||||||| | ||| | |||| |
|
|
| T |
5896403 |
aaattgtggacattgctttcaacaatttcaacggaaaactacaagaaaaatactttgcaacatgggaaaaaatgaagaatgatgaaaacaatgttctatc |
5896502 |
T |
|
| Q |
215 |
agaatttatccccacagtgga---ggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattcta |
311 |
Q |
| |
|
||| ||||||| ||| | ||| | || | || |||||||||| ||||||||||| |||| | ||||||||||| ||| |||| |||||||| || |
|
|
| T |
5896503 |
agactttatccacacgggggaaaggacagactacacatattatcaggatagtgtgacaatttctactaaaggtcaagtgatgcagttgcttaaaatttta |
5896602 |
T |
|
| Q |
312 |
acaatcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaa |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||||||| || | ||| | ||| ||||||||||||||||| ||||||||||||| | |
|
|
| T |
5896603 |
acaatctttacagccattgatttctcatcaaatcatttcgaaggaccaataccacatgtgttgatggaattcaaagcaatccattttctcaacttttcga |
5896702 |
T |
|
| Q |
412 |
acaa |
415 |
Q |
| |
|
|||| |
|
|
| T |
5896703 |
acaa |
5896706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 5612550 - 5612156
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||| ||||||||| || ||||| ||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
5612550 |
atacaaacacttagcgtcttggtgttgcggaacaacaaattgcatggttccatagaatgtacacactcactagaaaataagccttggaaaatgattcaaa |
5612451 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| | |||| | |||||| ||||||||| ||||||||| |||||| | ||||||||| |
|
|
| T |
5612450 |
ttgtggacattgcattcaatgatttcaacggaaaactaccagaaacattcttcacaacatgggaaaaaatgatgcacgatgaa------gttgtatcaga |
5612357 |
T |
|
| Q |
218 |
atttatccccacagtggaggcattcaaccc----atattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaac |
313 |
Q |
| |
|
||||| | || || || || ||| || ||||||||| |||||||| | |||| | |||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
5612356 |
ctttattcacatag-ggcggacgtcatccttgttatattatcaggatagtgtatctatttctactaaaggtcaagagatgaagttggttaaaattctaaa |
5612258 |
T |
|
| Q |
314 |
aatcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaac |
413 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| |||||||||||||| || ||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5612257 |
aatcttcatggccattgatttctcatccaatcactttgaaggaccaataccagaggggctgatgaaattcaaagcaatccatgttctcaacttttcaaac |
5612158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 5857085 - 5856691
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||||||| |||||||||||||||| |
|
|
| T |
5857085 |
ataccaacacttagtgtattggttttgcggaacaacaaacttcatggttccttagaatgttcacattcactagaaaataagccgtggaaaatgattcaaa |
5856986 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| || | |||||||||||| || ||| | |||||| |
|
|
| T |
5856985 |
ttgtcgacattgctttcaacaatttcaatggaaaactacttgaaaagtatttca---aatgggaacgatttatgcatgatgaaaataatgttcgatcaga |
5856889 |
T |
|
| Q |
218 |
atttatccccacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatc |
317 |
Q |
| |
|
||||||| | || | | |||||||||| ||||||||||| ||||||||||||||||| | |||||||| |||| |||||||||||| |
|
|
| T |
5856888 |
ctttatccattctcaggcgaacgaggaatcatattatcaggatagtgtgacaatttccaataaaggtcaacaaatggagttgattaagattctaacaatc |
5856789 |
T |
|
| Q |
318 |
ttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
415 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||| || | | | ||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
5856788 |
ttcacagccattgatttatcatccaatcattttgaaggtaaaataccagaagcgacgatgaacttcaaagcacttcatgttctcaacttttcaaacaa |
5856691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 5552187 - 5551790
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaa |
117 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||| | ||||| || || ||||||||| ||||| |||| |||||| ||||||||||||||| | |
|
|
| T |
5552187 |
ataccaactcttagtgtattggttttacggaacaacaagtttcatggaaccatagaatgttcacattcacaagcagataagcattggaaaatgattcaga |
5552088 |
T |
|
| Q |
118 |
ttgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcaga |
217 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| || || ||||| || ||| || | ||||| ||||||||||| |||||| ||||| | || |||| |
|
|
| T |
5552087 |
ttgtggacatttcttgcaacaatttcaatggtaagttacaagaaaaatacttcgcaacttgggatagaatgatgcaagatgaagttgatgttataccaga |
5551988 |
T |
|
| Q |
218 |
atttatccccacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatc |
317 |
Q |
| |
|
|| |||| ||| | | | | |||| ||||| ||||||||||| ||||| | ||||||||| | ||| ||||||||||||||||| ||||| |
|
|
| T |
5551987 |
cttcatccacacgcgaaacaaagactgctcatactatcaggatagtgtgacagtttctattaaaggtcagcaaatgaagtttgttaaaattctagcaatc |
5551888 |
T |
|
| Q |
318 |
ttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
415 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| || |||| || ||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5551887 |
ttcacagccattgatttctcatccaatcattttgaaggaccaataccacaggttctgatggaattcaaagcaatccatgttctcaacttttcgaacaa |
5551790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 27 - 415
Target Start/End: Original strand, 5854232 - 5854608
Alignment:
| Q |
27 |
cttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggaca |
126 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||||| ||| | ||||||||| ||||| |||| |||||| || |||||||||||| |||||||||| |
|
|
| T |
5854232 |
cttagtgtcttggttttgcggaataacaagtttcatggatccatggaatgttcacattcacaagcagataagcattagaaaatgattcagattgtggaca |
5854331 |
T |
|
| Q |
127 |
ttgctttcaacaatttcaatggaaaactatctgaaaactatttcacagcatgggaaagaatgatgcatgatgaacatgatgatgtatcagaatttatccc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || ||| || ||||||| ||||| |||| |||||| |||||| | ||||||| || |||| |
|
|
| T |
5854332 |
ttgctttcaacaatttcaatggaaaactacaagaaaaatacttcgcaacatgggatagaat--tgcaagatgaagatgatgttatatcagacttcatcca |
5854429 |
T |
|
| Q |
227 |
cacagtggaggcattcaacccatattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaac-----aatcttca |
321 |
Q |
| |
|
||| | || | | || |||||||||| |||| |||||| ||||||||||||||||| || ||| |||| |||||||||||||| |||||||| |
|
|
| T |
5854430 |
cacgctaaagaaagactacacatattatcaggatactgtgacagtttccaataaaggtcaggagatgaagttggttaaaattctaacaatataatcttca |
5854529 |
T |
|
| Q |
322 |
cagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
415 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||||| || ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5854530 |
cagcgattgatttctcatccaatcattt--------------cgaaggt-ctgatgaaattcaaagcagtccatgttctcaacttttcaaacaa |
5854608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 5604435 - 5604250
Alignment:
| Q |
18 |
ataccaacacttagtgtcttggttttgcggaacaacaaataccatggttccgtaaaatgttcactttcactagcaaataagcct---tggaaaatgattc |
114 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||||||||| |||||||| || ||||||||| || | ||| ||| |||||| ||||||||||||| |
|
|
| T |
5604435 |
ataccaacactcagtgtattggttttgtggaacaacaaattttatggttccatagaatgttcacatttagtagaaaacaagcctaattggaaaatgattc |
5604336 |
T |
|
| Q |
115 |
aaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttcac-agcatgggaaagaatgatgcatgatgaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
5604335 |
aaattgtggacattgcttccaacaatttcaatggaaaactacttgaaaagattttcacgagc-tgggacagaatgaagcatgatgaa |
5604250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 316 - 415
Target Start/End: Original strand, 5890816 - 5890915
Alignment:
| Q |
316 |
tcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
415 |
Q |
| |
|
|||| |||||||||||||||||||| ||| |||||||||||||||| || |||| ||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
5890816 |
tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggtcctaatgaaatttaaagcagtccatgttctcaacttttcaaacaa |
5890915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 278 - 415
Target Start/End: Complemental strand, 5604175 - 5604038
Alignment:
| Q |
278 |
taaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggaccaatcccgaaggtgctaatg |
377 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||| | ||||| ||||||||||||||| || ||||||||||||||| || | |||| ||||| |
|
|
| T |
5604175 |
taaaggtcaacaaatggagttggttaaaattctaacaatttacacagtcattgatttctcatccaactcttttgaaggaccaataccaatggtggtaatg |
5604076 |
T |
|
| Q |
378 |
aaattcaaagcaatccatgttctcaacttttcaaacaa |
415 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||| |
|
|
| T |
5604075 |
gacttcaaagcactttatgttctcaacttttcaaacaa |
5604038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 5572654 - 5572733
Alignment:
| Q |
279 |
aaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggacc |
358 |
Q |
| |
|
||||||||| | ||||| || ||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
5572654 |
aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacc |
5572733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 5584861 - 5584940
Alignment:
| Q |
279 |
aaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggacc |
358 |
Q |
| |
|
||||||||| | ||||| || ||||||||||||||| ||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
5584861 |
aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacc |
5584940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 5540791 - 5540867
Alignment:
| Q |
279 |
aaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaagg |
355 |
Q |
| |
|
||||||||| | ||||||| ||||||||| ||||| ||||||||||| | || ||||||| || ||||||||||| |
|
|
| T |
5540791 |
aaaggtcaacagatggagtacgttaaaattttaacagtcttcacagccgtcgacctctcatccaaccattttgaagg |
5540867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 415
Target Start/End: Complemental strand, 1481944 - 1481780
Alignment:
| Q |
249 |
tattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcatt |
348 |
Q |
| |
|
|||||||| |||| |||||| ||| | |||||||||| | |||||||| || |||||||| ||||| ||||| |||||||||||||||| ||||| | |
|
|
| T |
1481944 |
tattatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttagtaaaaattctgacaat--tcacaaccattgatttctcatccaatcact |
1481847 |
T |
|
| Q |
349 |
ttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaa |
415 |
Q |
| |
|
|||||||| || || ||| |||||| | | |||||| ||||||||||||||||||||||||| |
|
|
| T |
1481846 |
ttgaaggattgataccagaggatctaatggatctgaaagcactccatgttctcaacttttcaaacaa |
1481780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 1482101 - 1482019
Alignment:
| Q |
89 |
agcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaactatttca |
171 |
Q |
| |
|
|||||| || || ||| ||||||||||||||||||| ||||||||||||||||| | ||| || ||| | ||||| ||||||| |
|
|
| T |
1482101 |
agcaaaaaatccatggcaaatgattcaaattgtggatattgctttcaacaattttagtggtaagctaccagaaaaatatttca |
1482019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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