View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_high_9 (Length: 311)
Name: NF10436_high_9
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_high_9 |
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| [»] scaffold0169 (2 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: scaffold0169 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 7845 - 7993
Alignment:
| Q |
71 |
tttctataaaatactaataatgacaattattggaaatatgatattttaaaatttatatttgtcgattaatgtagtgaaggaggacacaattgaaatttta |
170 |
Q |
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| T |
7845 |
tttctataaaatactaataatgacaattattggaaatatgatattttaaaatttatatttgtcgattaatgtagtgaaggaggacacaattgaaatttta |
7944 |
T |
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| Q |
171 |
gtgaggacaaatttagtttcgtataaaattaaaacctgatttagttgcg |
219 |
Q |
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| T |
7945 |
gtgaggacaaatttagtttcgtataaaattaaaacctgatttagttgcg |
7993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 8041 - 8082
Alignment:
| Q |
267 |
ttagtctccatgtaacaatgcttaaaaatgttttgttggagg |
308 |
Q |
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| T |
8041 |
ttagtctccatgtgacaatgcttaaaaatgttttgttggagg |
8082 |
T |
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Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 218
Target Start/End: Original strand, 762262 - 762411
Alignment:
| Q |
71 |
tttctataaaatactaataatgacaatt-attggaaatatgatattttaaaatttatatttgtcgattaatgtagtgaaggaggacacaattgaaatttt |
169 |
Q |
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| T |
762262 |
tttctataaaatattaataatgacaattgattgaaaatatgatattttaaaatttatatttgtcgattaatgtagtgaaggaggacacaattgaaatatt |
762361 |
T |
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| Q |
170 |
agtgaggacaaa-tttagtttcgtataaaattaaaacctgatttagttgc |
218 |
Q |
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| T |
762362 |
agcgaggacaaattttagtttcatataaaatcaagacctgatttagttgc |
762411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 36990640 - 36990756
Alignment:
| Q |
99 |
attggaaatatgatattttaaaatttatatttgtcgattaatgtagtgaaggaggacacaattgaaatttt-agtgaggacaaa-tttagtttcgtataa |
196 |
Q |
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| T |
36990640 |
attgaaaatacgatattttaaaatttatatttatccattaacatagtgaaggaggtcacaatttaatttttcagtcaagacaaattttagtttcgtataa |
36990739 |
T |
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| Q |
197 |
aattaaaacctgattta |
213 |
Q |
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| T |
36990740 |
aattgacatctgattta |
36990756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 308
Target Start/End: Original strand, 762464 - 762501
Alignment:
| Q |
271 |
tctccatgtaacaatgcttaaaaatgttttgttggagg |
308 |
Q |
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| T |
762464 |
tctccatgtaacaatgcttaaaaatattttgttggagg |
762501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 10974 - 10901
Alignment:
| Q |
1 |
ccctatttttcccatgctttgttttctgtttctgaatgtacatacatcatctattcttcatgtgcaagtctttc |
74 |
Q |
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| T |
10974 |
ccctatttttcccatgctttgttttctgtttctgaatgtacatacatcatctattcttcatgtgcaagtctttc |
10901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 200
Target Start/End: Complemental strand, 38012297 - 38012199
Alignment:
| Q |
103 |
gaaatatgatattttaaaatttatatttgtcgattaatgtagtgaaggaggacacaattgaaattttagtgaggacaaa-tttagtttcgtataaaatt |
200 |
Q |
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| T |
38012297 |
gaaatatgatattgtaaaatttacatttatagattaacaaaatgaatgataacacaaatgaattttgagtgaagacaaattttagtttcgtataaaatt |
38012199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Original strand, 26654761 - 26654799
Alignment:
| Q |
270 |
gtctccatgtaacaatgcttaaaaatgttttgttggagg |
308 |
Q |
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| T |
26654761 |
gtctccatgtaactatgcttaaaaatattttgttggagg |
26654799 |
T |
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