View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_1 (Length: 719)
Name: NF10436_low_1
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 110 - 703
Target Start/End: Complemental strand, 37620583 - 37619988
Alignment:
| Q |
110 |
gcttcaacttatctaatcttttattaaagtaagataatgctat-----caattagtatctatcacctatcctatctcccattacaactagaatattagaa |
204 |
Q |
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| T |
37620583 |
gcttcaacttatctaatcttttattaaagtaagagaatgctatgctatcaattagtatccatcacctatcctatctcccattacaactagaatattagaa |
37620484 |
T |
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| Q |
205 |
gggcttaaacttaggacctctaggtccaataatgtctgtgnnnnnnnnatcactagatcaaatgttgaaaacaaggattatttatnnnnnnnnttgattt |
304 |
Q |
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| T |
37620483 |
gggcttaaacttaggacctctaggtccaataatgtctgtgttttttttatcactagatcaaatgttgaaaacaaggatcatttataaaaaaaattgattt |
37620384 |
T |
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| Q |
305 |
gaagagaatggaagaatttgtttattttttacttaattaggaaaggggaaaatgaattaattatatgcatttgatgtctgttcattgaaataattattat |
404 |
Q |
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| T |
37620383 |
gaagagaatggaagaatttatttattttttactta----ggaaaggggaaaatgaattaattatatgcatttgatgtctgttcattgaaataattattat |
37620288 |
T |
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| Q |
405 |
aagataaaactcacaaactgaattatcatacttcgttaaacaataatgaatatttcatgactattgtgtttacccaaaaaaggcatgattggttttgaag |
504 |
Q |
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| T |
37620287 |
aagataaaactcacaaactgaattatcatacttcgttaaacaataatgaatatttcatgactattgtgtttacccaaaaaaggcatgattggttttgaag |
37620188 |
T |
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| Q |
505 |
aaattactcatatttactcaagacttgaacataagtaaaacaaagaagatcatgtcatatttttgtgattttgttgaagggactacgaagtttgtgtttt |
604 |
Q |
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| T |
37620187 |
aaattactcatatttactcaagacttgaacataagtaaaacaaagaagatcatgtcatatctttgtgattttgttgaagggactacgaagtttgtgtttt |
37620088 |
T |
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| Q |
605 |
ataaataaataaaaatgcaagaactgatcaagtaaatggataaacctttgtagacttagaaaaatagacagaagg-aaacaagtctttgctcgacattac |
703 |
Q |
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| T |
37620087 |
ataaataaataaaaatgcaagaactgatcaagtaaatggataagcctttgtagacttagaaaaataaacagaaggaaaacaagtctttgctcgacattac |
37619988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 37620688 - 37620618
Alignment:
| Q |
5 |
gggttcgaacccagataacttatctaatattttatgaaagtaaaactggaactgtaaaatgttggtcataa |
75 |
Q |
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| T |
37620688 |
gggttcgaacccaggtaacttatctaatattttatgaaagtaaaactggaactgtaaaatgttggtcataa |
37620618 |
T |
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