View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_10 (Length: 330)
Name: NF10436_low_10
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 32607147 - 32607454
Alignment:
| Q |
1 |
aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgacttaattgtgagctatacggaagaactatacactgagcacaaag |
100 |
Q |
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| T |
32607147 |
aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt----gtgagctatacggaagaactatacactgagcacaaag |
32607242 |
T |
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| Q |
101 |
attcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaatacattccaatcacaaatcagtagtgttttctt |
200 |
Q |
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| T |
32607243 |
attcttcgaagtctcagctaaagaagttgattaaaaggtagaactctcattcatcca-acctgtaaatactttccaatcacaaatcagtagagttttctt |
32607341 |
T |
|
| Q |
201 |
caagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttcaaattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32607342 |
caagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttcaaattg |
32607441 |
T |
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| Q |
301 |
gtgcataaatttg |
313 |
Q |
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| T |
32607442 |
gtgcataaatttg |
32607454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 95 - 257
Target Start/End: Original strand, 32568829 - 32568991
Alignment:
| Q |
95 |
acaaagattcttcgaagtctcagctaaagaagttgattaaaaggtagaaatctcattcatccacacctgtaaatacattccaatcacaaatcagtagtgt |
194 |
Q |
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| T |
32568829 |
acaaagattcttcaaagtctcagctaaagaagctgattaaaaggtcaaactctcattcatcaatacctgtaaatgctattcaatcacaaatcagtaaagt |
32568928 |
T |
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| Q |
195 |
tttcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatat |
257 |
Q |
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| T |
32568929 |
tttctacaagggtttatttttccgacatgttagtggacttgacaataggattccaaagcatat |
32568991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 32599129 - 32599209
Alignment:
| Q |
197 |
tcttcaagggtttattctttggacatgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaac |
277 |
Q |
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| T |
32599129 |
tcttcaagggtttatttcttcgccatgttaatggacttgacaatagggttccaaaccatatggtgagcgtggacgagaaac |
32599209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 32617952 - 32618040
Alignment:
| Q |
220 |
catgttaatggacttgacaaaaggattccaaagcatattttgagcgtgaacaagaaacatcttcgtcgatgcttcaaattggtgcataa |
308 |
Q |
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| T |
32617952 |
catgttaatggactacacaataggatttgaaagcatatggtgagcgtggacgagaaacatctccgtcaatgcttcgaattggtacataa |
32618040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32568744 - 32568798
Alignment:
| Q |
1 |
aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttg |
55 |
Q |
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||||||||||| ||| |||||||| | ||||||||||||| |||||| ||||||| |
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| T |
32568744 |
aatgtaagcttatgggttcaaaaagagggtcaatggaaaaaagattcattgcttg |
32568798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32575167 - 32575225
Alignment:
| Q |
1 |
aatgtaagcttttggattcaaaaacaaggtcaatggaaaacagattccttgcttgactt |
59 |
Q |
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||||||||||| | ||||| ||| |||| |||||||||| |||||||||||||||||| |
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| T |
32575167 |
aatgtaagcttatatattcagaaagaaggccaatggaaaaaagattccttgcttgactt |
32575225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 32574452 - 32574492
Alignment:
| Q |
76 |
gaagaactatacactgagcacaaagattcttcgaagtctca |
116 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||| |
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| T |
32574452 |
gaagcactatacactgaacgcaaagattcttcgaagtctca |
32574492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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