View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_12 (Length: 309)
Name: NF10436_low_12
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 52033269 - 52033545
Alignment:
| Q |
18 |
ctaaaatatttggcagggctttacatgaaaaggatgagaatcgcatgtcaaaaagtaagttctttttgattgcacttgtgtgcagctttgcatggtatgt |
117 |
Q |
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| T |
52033269 |
ctaaaatatttggcaggactttacatgaaaaggatgagaatcgcatgtcaaaagggaagttctttttgattgcacttatgtgcagctttgcatggtatgt |
52033368 |
T |
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| Q |
118 |
ggttccaggctacctctttgccaccttatcaattatttcatgggtttgttggatattccctaattcagtaacagcacatcaaattggatctgggaagaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033369 |
ggttccaggctacctctttgccaccttatcaattatttcatgggtttgttggatattccctaattcagtaacagcacatcaaattggatctgggaagaat |
52033468 |
T |
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| Q |
218 |
ggccttggtttgggttccttttctcttgactggaccactattgcttcattccttgggaatccacttgttacccctat |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52033469 |
ggccttggtttgggttccttttctcttgactggaccactattgcttcattccttgggaatccacttgttacccctat |
52033545 |
T |
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