View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_16 (Length: 261)
Name: NF10436_low_16
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_16 |
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| [»] scaffold0238 (1 HSPs) |
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Alignment Details
Target: scaffold0238 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 12796 - 12831
Alignment:
| Q |
116 |
gatgggaggatcaaggcttaaagctacggcagtgag |
151 |
Q |
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| T |
12796 |
gatgggaggatcaaggcttaaagctacggcagtgag |
12831 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 151
Target Start/End: Complemental strand, 12604148 - 12604113
Alignment:
| Q |
116 |
gatgggaggatcaaggcttaaagctacggcagtgag |
151 |
Q |
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| T |
12604148 |
gatgggaggatcaaggcttaaagctacggcagtgag |
12604113 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 151
Target Start/End: Original strand, 10452960 - 10452995
Alignment:
| Q |
116 |
gatgggaggatcaaggcttaaagctacggcagtgag |
151 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
10452960 |
gatgggaggatcaaggcttaaagctacgacagtgag |
10452995 |
T |
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