View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_18 (Length: 250)
Name: NF10436_low_18
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 52033886 - 52034130
Alignment:
| Q |
1 |
caaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatatcatcaacttcaatcttcccgaactggaaaggaagacattca |
100 |
Q |
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| T |
52033886 |
caaattgtggaattaaattactattgctgattaaattaactaactgcagagatatatatcatcaacttcaatcttcccgaactggaaaggaagacattca |
52033985 |
T |
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| Q |
101 |
cacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgcttgtggtttcatttttacttgcacttgcattgtgtattttcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52033986 |
cacaagattgatgaagaagtataaagacatacctaattggtggtttcatgttacgcttgtggtttcatttttacttgcacttgcattgtgtattttcaag |
52034085 |
T |
|
| Q |
201 |
aaagaagagatacaaatgccatggtgggctctcatctctgcttct |
245 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52034086 |
aaagaagagatacaaatgccatggtgggctctcatctttgcttct |
52034130 |
T |
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