View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_2 (Length: 588)
Name: NF10436_low_2
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 576
Target Start/End: Original strand, 36276738 - 36277315
Alignment:
| Q |
1 |
caccactacctaccaataattatatgttatgtaaatacagttcaattattagctgcgtgaaggtttga--tttcttggagcaaaatctcgaatatttcct |
98 |
Q |
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| T |
36276738 |
caccactacctaccaataattatatgttatgtaaatacaattcaattagtagctgcgtgaaggtttgagatttcttggagcaaaatctcgaatatttcct |
36276837 |
T |
|
| Q |
99 |
gtcacttcttcacactatcgtcattaaacatttgaccagaaaaaagtaacatttttattatgtcaaatttattgtcatgcattttctattttgcattagg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36276838 |
gtcacttcttcacactatcgtcattaaacatttgaccagaaaaaagtaacatttttattatgtcaaatttattgtcatgcattttctattttgcattagg |
36276937 |
T |
|
| Q |
199 |
tagctggttttccacttggaacaagaacataaaactagattaattgccacgaacaacttggttacaaactaggacaaaaaccaaactataagagcacgat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36276938 |
tagctggttttccacttggaacaagaacataaaactagattaattgccacgaacaacttggttacaaactaggacaaaaaccaaactataagagcacaat |
36277037 |
T |
|
| Q |
299 |
tatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacacccttaatagctaaacttattttgtgcaactttagctataaatagcatta |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277038 |
tatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacaccctaaatagctaaacttattttgtgcaactttagctataaatagcatta |
36277137 |
T |
|
| Q |
399 |
gcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctggcagctgtttctctttgtgcattgnnnnnnncagcagccacaggaggc |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36277138 |
gcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctggcagctgtttctctttgtgcattgaaaaaaacagcagccacaggaggc |
36277237 |
T |
|
| Q |
499 |
ccgaggtcattgtcttgtgcaaatttccttgtgttaaagagatctcttgatgttggtattttcatcactgtctgtctg |
576 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277238 |
ccgaggtcattgtcttgtgcaaatttctttgtgttaaagagatctcttgatgttggtattttcatcactgtctgtctg |
36277315 |
T |
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