View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_21 (Length: 242)
Name: NF10436_low_21
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 23067888 - 23067685
Alignment:
| Q |
20 |
ctgccaatatagtttatgtatgctaaaattgaaattgtttattgtagttgaagatctcgagaatctattctgatttgtgaatcatagtctttatctttgc |
119 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| |
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| T |
23067888 |
ctgccaatataatttatgtatgctaaaatcgaaattgtttattgtagttgaagatctcgagaatctattgtgatttgtgaatcatagtatttttctttgc |
23067789 |
T |
|
| Q |
120 |
tgagatacctaccctcatcgtcgggttcaccctcaccgcagagacaccgaacaacattcgtcggatttggtggtgtattggtaagtattaattattattt |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
23067788 |
tgagatacctaccctcatcgccgggttcaccctcaccgcagagacaccgaacaacattcgtcagattcggtggtgtattggtaagtattaattattattt |
23067689 |
T |
|
| Q |
220 |
ttta |
223 |
Q |
| |
|
|||| |
|
|
| T |
23067688 |
ttta |
23067685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 28705625 - 28705413
Alignment:
| Q |
20 |
ctgccaatatagtttatgtatgctaaaattgaaattgtttattgtagttgaagatctcgagaatctattctgatttgtgaatcatagtctttatctttgc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||| |
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| T |
28705625 |
ctgccaatatagtttatgtatgctaaaatcgaaattgtttattgtagttgaagatttcaagaatctattgtgatttgtgaatcatagtctttttctttgc |
28705526 |
T |
|
| Q |
120 |
tgagatacctaccctcatcgtcgggttcaccctcaccgcagagacaccgaacaacattcgtcggatttggtggtgtattggtaagtattaattattattt |
219 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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|
| T |
28705525 |
tgagatacctaccctcatcgccaagttcaccctcaccgtagagacaccgaacaacattcgtcggattcggtggtgtattggtaagtattaattattatat |
28705426 |
T |
|
| Q |
220 |
tttagattttctt |
232 |
Q |
| |
|
||||||||||||| |
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|
| T |
28705425 |
tttagattttctt |
28705413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 26908801 - 26908598
Alignment:
| Q |
20 |
ctgccaatatagtttatgtatgctaaaattgaaattgtttattgtagttgaagatctcgagaatctattctgatttgtgaatcatagtctttatctttgc |
119 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| || |||| |
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| T |
26908801 |
ctgccaatatagtttgtgtatgctaaaattgaaattgtttattgtagttgaagatctcgagaatctattgcgatttgtgaatcagagtatttttcattgc |
26908702 |
T |
|
| Q |
120 |
tgagatacctaccctcatcgtcgggttcaccctcaccgcagagacaccgaacaacattcgtcggatttggtggtgtattggtaagtattaattattattt |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||| || |||| | || |||||||||||||||||||||||||||| |
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|
| T |
26908701 |
tgagatacctaccctcatcgtcggattcaccctcacagcagagacatcgaacaacatacgccggactcggaggtgtattggtaagtattaattattatta |
26908602 |
T |
|
| Q |
220 |
ttta |
223 |
Q |
| |
|
|||| |
|
|
| T |
26908601 |
ttta |
26908598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 25809538 - 25809696
Alignment:
| Q |
20 |
ctgccaatatagtttatgtatgctaaaattgaaattgtttattgtagttgaagatctcgagaatctattctgatttgtgaatcatagtctttatctttgc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
25809538 |
ctgccaatatagtttatgtatgctaaaatcgaaattgtttattgtagttgaagatctcgagaatctattgtgatttgtgaatcatagtctttttctttgc |
25809637 |
T |
|
| Q |
120 |
tgagatacctaccctcatcgtcgggttcaccctcaccgcagagacaccgaacaacattc |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25809638 |
tgagatacctaccctcatcgccgggttcaccctcaccgcagagacaccgaacaacattc |
25809696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 15024455 - 15024503
Alignment:
| Q |
22 |
gccaatatagtttatgtatgctaaaattgaaattgtttattgtagttga |
70 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| |||||||||||||||| |
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| T |
15024455 |
gccaatatattttatttatgctaaaattgaaaatgtttattgtagttga |
15024503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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