View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_3 (Length: 527)
Name: NF10436_low_3
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 23 - 518
Target Start/End: Complemental strand, 38346750 - 38346255
Alignment:
| Q |
23 |
agcagatacatactcgttcacaaatggatgtggtaaaaaacaatcctaaatatttgtgacaccgactgtcatgttgacagttttgttcatattttctgtt |
122 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346750 |
agcagatacatactcgttcacaaaaggatgtggtaaaaaacaatcctaaatatttgtgacaccgactgtcatgttgacagttttgttcatattttctgtt |
38346651 |
T |
|
| Q |
123 |
attttggttggttgctgaatctatcttggtgggatagataggattgttttgatatttggtctttttctgctagttctttggaatctgaaaagctttagtt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38346650 |
attttggttggttgctgaatctatcttggtgggatagataggattgttttgatatttggtctttttctgctagttctttggaatctgaaaagctttagtt |
38346551 |
T |
|
| Q |
223 |
aaaagcttgaagtttcttggctcctaagggataatctaggcttacctttccttagagtttctcatgtgta--ctctgtttgtatacggttcaggcattct |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
38346550 |
aaaagcttgaagtttcttggctcctaagggataatctaggcttacctttccttagagtttctcatgtgtactctctgtttgtatacagttcaggcattct |
38346451 |
T |
|
| Q |
321 |
ctcgacttttattgctttattgtgcctttatnnnnnnntaaccctgatattttacctttattacttgcaatgattcagtaaacttgccgagacgctatag |
420 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38346450 |
ctcgacttttattgctttattgtgcctttataaaaaaaaaa--ctgatattttacctttattacttgcaatgattcagtaaacttgccaagacgctatag |
38346353 |
T |
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| Q |
421 |
accactgctatcgtgttcctcttctcctctacaaaactcatttggttaatccttagacaaagaagtagaaacttttagactgccaccttctttcatct |
518 |
Q |
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| T |
38346352 |
accactgctatcgtgttcctcttctcctctacaaaactcatttggttaatccttagacaaagaagtagaaacttttagactgccaccttctttcatct |
38346255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 18438706 - 18438751
Alignment:
| Q |
116 |
ttctgttattttggttggttgctgaatctatcttggtgggatagat |
161 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
18438706 |
ttctgttattttagatggttgctgaatctatcttagtgggatagat |
18438751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 18449564 - 18449609
Alignment:
| Q |
116 |
ttctgttattttggttggttgctgaatctatcttggtgggatagat |
161 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
18449564 |
ttctgttattttagatggttgctgaatctatcttagtgggatagat |
18449609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 18454657 - 18454702
Alignment:
| Q |
116 |
ttctgttattttggttggttgctgaatctatcttggtgggatagat |
161 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||||||||| |
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| T |
18454657 |
ttctgttattttagatggttgctgaatctatcttagtgggatagat |
18454702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 8455537 - 8455476
Alignment:
| Q |
125 |
tttggttggttgctgaatctatcttggtgggatagataggattgttttgatatttggtcttt |
186 |
Q |
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| T |
8455537 |
tttggatggttgataattctatcttagtgggatagatttgtttgttttgatatttggtcttt |
8455476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 30559305 - 30559228
Alignment:
| Q |
116 |
ttctgttattttggttggttgctgaatctatct---tggtgggatagataggattgttttgatatttggtctttttct |
190 |
Q |
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|||||||||||||| |||||||||||||||||| | || ||||||| |||||| | ||||||||| | |||||||| |
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| T |
30559305 |
ttctgttattttgggtggttgctgaatctatcttagtagttggatagagaggattctgttgatattttgactttttct |
30559228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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