View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_5 (Length: 466)
Name: NF10436_low_5
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 52082546 - 52082096
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtgtgtgctgatgttaatttctgg |
110 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52082546 |
cacagagaaaggagtcgggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtgtgtgctgatgttaatttctgg |
52082447 |
T |
|
| Q |
111 |
atggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctcatttttgtcctagtgacgacaagtggaaacctttattgaaccatggat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52082446 |
atggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctcatttttgtcctagtgacgacaagtggaaacctttattgaaccttggat |
52082347 |
T |
|
| Q |
211 |
gccttgttttctagtattctgaaagtcataaaactattatttgaaatgttatcttcatcacaacatttcaatctttacttttcccatgnnnnnnnnnnnn |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52082346 |
gccttgttttctagtattctgaaagtgataaaactattatttgaaatgttatcttcatcacaacatttcaatctttacttttcccatgttttgtttttct |
52082247 |
T |
|
| Q |
311 |
nnnncatgacatatattaaagaaagaattgtagtttggttgatgattannnnnnngctaacattttacaaggta---------------atcgcacattc |
395 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
52082246 |
ttttcatgacatatattaaagaaagaaatgtagtttggttgatgattattttattgctaaca-tttacaaggtaatctccaagaacaatatcgcacattc |
52082148 |
T |
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| Q |
396 |
tgggtatggtgattattattgattgattagaagtaaaggaaactcatcatga |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52082147 |
tgggtatggtgattattattgattgattagaagtaaaggaaactcatcatga |
52082096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 52092742 - 52092458
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtgtgtgctgatgttaatttctgg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | | | ||||| | | ||||||| |||||||||||||||| |
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| T |
52092742 |
cacagagaaaggagtgaggcacgtagta-aaaactgcacacgattgagagagataaatatacgaggttgtcgtgaggtgtgtgttgatgttaatttctgg |
52092644 |
T |
|
| Q |
111 |
atggtgatggtaattttaaggtcatcattgagaaaa----attatggctccctctcatttttgtcctagtgacgacaagtggaaacctttattgaaccat |
206 |
Q |
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| | |||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52092643 |
acgatgatggtattttcaaggtcatcattgagaaattaagattatggctccctctcatttttgt---agtgacgacaagtggaaacctttattgaaccat |
52092547 |
T |
|
| Q |
207 |
ggatgccttgttttctagtattctgaaagtcataaaactattatttgaaatgttatcttcatcacaacatttcaatctttacttttccc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
52092546 |
ggatgccttgttttctagtattctgaaagtgataaaacagttatttgaaatgttatcttcatcacaacatttcaatcttcatttttccc |
52092458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 52092350 - 52092305
Alignment:
| Q |
393 |
ttctgggtatggtgattattattgattgattagaagtaaaggaaac |
438 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
52092350 |
ttctggttttggtgattattattgattgattagaagtaaaggaaac |
52092305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 35901779 - 35901836
Alignment:
| Q |
14 |
agagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttg |
71 |
Q |
| |
|
||||||||||||||| || || |||||||||| |||| ||||||||||||||||||| |
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| T |
35901779 |
agagaaaggagtgagacaagtcatagaaaactgtacacaactgagagagataaatttg |
35901836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 1754484 - 1754287
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtgtgtgctgatgttaatttctgg |
110 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||||| |||| |||||||| |||| | ||| | |||||| | ||||||| |||| ||| |
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| T |
1754484 |
cacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataagtttgcgacattatgtcaatgtggccgttgatgttgatttatgg |
1754385 |
T |
|
| Q |
111 |
atggtgatggtaattttaaggtcatcattgagaaaaattatggctccctctcatttttgtcctagtgacgacaagtggaaacctttattgaaccatgg |
208 |
Q |
| |
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| ||||||||| | | |||| ||| |||||||| || | | ||||| || ||||| ||||||||| |||||||||||| |||||||| ||||| |
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| T |
1754384 |
aatgtgatggtattgtcaaggccattgttgagaaagatcaagactccccctggtttttatcctagtgatagcaagtggaaacccttattgaatcatgg |
1754287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 1528338 - 1528397
Alignment:
| Q |
12 |
acagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttg |
71 |
Q |
| |
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|||||||| ||||| | ||| || |||||||||||||||| ||||||||||||||||||| |
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| T |
1528338 |
acagagaatggagtcatgcaagttgtagaaaactgcacacaactgagagagataaatttg |
1528397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 6006292 - 6006218
Alignment:
| Q |
11 |
cacagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataa |
85 |
Q |
| |
|
|||| |||| ||||||| ||| || ||||||||||||| || | ||||||||||||||||| |||||||||||| |
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| T |
6006292 |
cacaaagaagggagtgatgcaagtcgtagaaaactgcaaacaattgagagagataaatttgcaggattgtcataa |
6006218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 12120301 - 12120336
Alignment:
| Q |
36 |
gtagaaaactgcacacgactgagagagataaatttg |
71 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
12120301 |
gtagaaaactgcacacaactgagagagataaatttg |
12120336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Complemental strand, 12845557 - 12845480
Alignment:
| Q |
12 |
acagagaaaggagtgaggcacgtagtagaaaactgcacacgactgagagagataaatttgtgggattgtcataatgtg |
89 |
Q |
| |
|
|||||||| ||||||||||| || |||| ||| |||||| |||||||||| |||||| |||||||||| |||||| |
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|
| T |
12845557 |
acagagaagggagtgaggcaagtggtagcaaaatgcacaaagttgagagagatcaatttgagggattgtcaaaatgtg |
12845480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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