View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10436_low_8 (Length: 420)
Name: NF10436_low_8
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10436_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 39092636 - 39092238
Alignment:
| Q |
17 |
catcaaactacccaaaagaaagagtaccaaaagttgttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39092636 |
catcaaactacccaaaagaaagagtaccaaaagttgttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatc |
39092537 |
T |
|
| Q |
117 |
ttaactcaagtaattatcagaaaatcaatttaacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacc |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39092536 |
ttaactcaagtaattatcataaaatcaatttaacaccatgggatctccgattccttccacttgaaaccatccaaaaaggccttctttttcaccaacaacc |
39092437 |
T |
|
| Q |
217 |
cattcctagcacatcaaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatc |
316 |
Q |
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| T |
39092436 |
cattcctagcacatcaaaccaaaaccaaatcaaccatttgaaacaaaccctttccacaacactttcctatttcccacccttaacgggccgtcttataatc |
39092337 |
T |
|
| Q |
317 |
acccaacacaacgtgaccacaaacaacaacaataacacatcatgttccatcatttgcaacaacctcggtgctctcttcgtccatgcaaaagcggaaaat |
415 |
Q |
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| T |
39092336 |
acccaacacaacgtgaccacaaacaacaacaacaacacatcatgttccatcctttgcaacaacctcggtgctctcttcgtccatgcaaaagcggaaaat |
39092238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 50 - 414
Target Start/End: Complemental strand, 39089197 - 39088848
Alignment:
| Q |
50 |
ttgttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatcttaactcaagta---attatcagaaaatcaatt |
146 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||| | |||||| | |||| ||| |
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| T |
39089197 |
ttgttcatggcttccatcaaagtgatatccacaacaacagttcaagcaccaattgaccacaataatctcaactcaagaagtgattatcgaataatcgatt |
39089098 |
T |
|
| Q |
147 |
taacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaaccaaat |
246 |
Q |
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|||||||||||||||||| ||| || | |||||||||| |||| |||| ||||||| |||||| ||||||| ||||||||||||||| |
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| T |
39089097 |
taacaccatgggatctccaatttctcttagttgaaaccattcaaaaaggcattcttttccaccaaa---ccattcc---------aaaccaaaaccaaat |
39089010 |
T |
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| Q |
247 |
caaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaacaacaac |
346 |
Q |
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| T |
39089009 |
caaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacaggccgtcttataatcacccaacacaatgtgaccacaaacaac--- |
39088913 |
T |
|
| Q |
347 |
aataacacatcatgttccatcatttgcaacaacctcggtgctctcttcgtccatgcaaaagcggaaaa |
414 |
Q |
| |
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| T |
39088912 |
---aacacatcatgttccatcatttgcaacaacattggtgctctcttcatccacgccaaagcggaaaa |
39088848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 53 - 414
Target Start/End: Complemental strand, 39083542 - 39083194
Alignment:
| Q |
53 |
ttcatggattccatgaaagtgatatccacaacaacagttcaagcaccaattgacaacaacaatcttaactcaagtaattatcagaaaatcaatttaacac |
152 |
Q |
| |
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|||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| | ||||||||| |||| | ||||||| |
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| T |
39083542 |
ttcatggattccattagtgtgatatccacaacaaaagttcaagcaccaattgacaacaataatctcaactcaactgattatcagataatcgaattaacac |
39083443 |
T |
|
| Q |
153 |
catgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcaccaacaacccattcctagcacatcaaaccaaaaccaaatcaacca |
252 |
Q |
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| T |
39083442 |
catgggatcttcaatttctcccacttgaaaccatccaaaaaggccttcttttccacc----------------------aaaccaaaaccaaatcaacca |
39083365 |
T |
|
| Q |
253 |
tttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtcttataatcacccaacacaacgtgaccacaaacaacaacaataac |
352 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39083364 |
tttgaaacaaacactttctacaacactttcctatttcccactcttaacaggccgtctcataatcacccaacacaacgtgaccacaaacaacaacaacaac |
39083265 |
T |
|
| Q |
353 |
a---------catcatgttccatcatttgcaacaacctcggtgctctcttcgtccatgcaaaagcggaaaa |
414 |
Q |
| |
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| T |
39083264 |
aacaacaatgcatcatgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaa |
39083194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 110 - 402
Target Start/End: Complemental strand, 39072024 - 39071750
Alignment:
| Q |
110 |
aacaatcttaactcaagtaattatcagaaaatcaatttaacaccatgggatctccgattccttccacttgaaaccatccaaacaggccttctttttcacc |
209 |
Q |
| |
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|||||||| ||||||||| ||||| | ||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
39072024 |
aacaatctcaactcaagtgattatgaaaaaattgatctaacaccatgggatctccaattccttccacttgaaaccatccaaagaggccatcttttccacc |
39071925 |
T |
|
| Q |
210 |
aacaacccattcctagcacatcaaaccaaaaccaaatcaaccatttgaaacaaacactttccacaacactttcctatttcccacccttaacgggccgtct |
309 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||| |
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| T |
39071924 |
aac---ccattcc---------aaaccaaaaccaaatcaaccatttgaaacaaacactttctacaacactctcttatttcccacccttaa---gccgtct |
39071840 |
T |
|
| Q |
310 |
tataatcacccaacacaacgtgaccacaaacaacaacaataacacatcatgttccatcatttgcaacaacctcggtgctctcttcgtccatgc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||| |
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| T |
39071839 |
tataatcacccaacacaacgtgaccacaaacaacaac---aacacatcatgttccataatttgcaacaaccttggtgccctattcgtccatgc |
39071750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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