View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10436_low_9 (Length: 372)

Name: NF10436_low_9
Description: NF10436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10436_low_9
NF10436_low_9
[»] chr4 (8 HSPs)
chr4 (1-311)||(55116707-55117017)
chr4 (310-355)||(55117093-55117141)
chr4 (145-234)||(36910041-36910130)
chr4 (40-88)||(36629931-36629979)
chr4 (40-86)||(18359388-18359434)
chr4 (40-86)||(36603494-36603540)
chr4 (40-74)||(36910187-36910221)
chr4 (40-88)||(20211295-20211343)
[»] chr3 (2 HSPs)
chr3 (144-243)||(25597387-25597486)
chr3 (42-243)||(25602183-25602379)
[»] chr5 (2 HSPs)
chr5 (40-85)||(19657757-19657802)
chr5 (40-85)||(19674596-19674641)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 55116707 - 55117017
Alignment:
Q  1 gagtggctatagcaacaaaataaagacctcatgattactggtataagtaaaggtacaaagacttggagcagatagcttaattttggcagttttagcaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  55116707 gagtggctatagcaacaaaataaagacctcatgattactggtataagtaaaagtacaaagacttggagcagatagcttaattttggcagttttggcaaat 55116806  T
Q  101 tctgatgatttattacaaatagataaattaacaagggcttcacttcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  55116807 tctgatgatttattacaaatagataaattaacaagggcttcacttcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaacaa 55116906  T
Q  201 actattcaaccttttaaaggataaaaagggctcattacaactgtcgcaaaatgcaaaattcttcagagaattgaatgtggtgatgtaaaccatcctccac 300  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55116907 actattcgaccttttaaaggataaaaagggctcatcacaactgtcgcaaaatgcaaaattcttcagagaattgaatgtggtgatgtaaaccatcctccac 55117006  T
Q  301 atcctctttga 311  Q
    |||||||||||    
T  55117007 atcctctttga 55117017  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 55117093 - 55117141
Alignment:
Q  310 gaaggaaggcactttatttaggttat---tgctattgaaggaaggcact 355  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  55117093 gaaggaaggcactttatttaggttattgctgctattgaaggaaggcact 55117141  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 36910130 - 36910041
Alignment:
Q  145 tcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaccaaactattcaaccttttaaaggataaaaagggctca 234  Q
    |||||||||||| ||| ||  || |||||| |||||||||| ||||  |||||||||||||||||| |  ||||||  ||||||||||||    
T  36910130 tcacttgatatgttgaggatttgagcatcctttacctcacagctactaatgaccaaactattcaacttggtaaaggcgaaaaagggctca 36910041  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 36629979 - 36629931
Alignment:
Q  40 ggtataagtaaaggtacaaagacttggagcagatagcttaattttggca 88  Q
    |||| |||| |||||||||||||||||| ||||||||| ||||||||||    
T  36629979 ggtaaaagtgaaggtacaaagacttggaacagatagctcaattttggca 36629931  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 18359434 - 18359388
Alignment:
Q  40 ggtataagtaaaggtacaaagacttggagcagatagcttaattttgg 86  Q
    |||| ||| ||||||||||||| ||||||||||||||| ||||||||    
T  18359434 ggtaaaagaaaaggtacaaagaattggagcagatagctcaattttgg 18359388  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 36603494 - 36603540
Alignment:
Q  40 ggtataagtaaaggtacaaagacttggagcagatagcttaattttgg 86  Q
    |||| ||| ||||||||||||| ||||||||||||||| ||||||||    
T  36603494 ggtaaaagaaaaggtacaaagaattggagcagatagctcaattttgg 36603540  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 36910221 - 36910187
Alignment:
Q  40 ggtataagtaaaggtacaaagacttggagcagata 74  Q
    |||| ||||||||||||||||||||||||||||||    
T  36910221 ggtaaaagtaaaggtacaaagacttggagcagata 36910187  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 20211295 - 20211343
Alignment:
Q  40 ggtataagtaaaggtacaaagacttggagcagatagcttaattttggca 88  Q
    |||| ||||||||||||||||||| ||| |||||| || ||||||||||    
T  20211295 ggtaaaagtaaaggtacaaagactcggaccagataactcaattttggca 20211343  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 25597486 - 25597387
Alignment:
Q  144 ttcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaccaaactattcaaccttttaaaggataaaaagggctcattacaactg 243  Q
    ||||||||||||||  |||||| | |||||||||||||||||  |    |||||||||||||||||| |||||||||  ||||||||||||  |||||||    
T  25597486 ttcacttgatatgaccaagacacgggcatcccttacctcacatttctgaatgaccaaactattcaacattttaaaggcgaaaaagggctcaacacaactg 25597387  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 25602379 - 25602183
Alignment:
Q  42 tataagtaaaggtacaaagacttggagcagatagcttaattttggcagttttagcaaattctga-tgatttattacaaatagataaattaacaagggctt 140  Q
    ||||||||||||||| ||||||||||| |||||| | ||||||| ||||| | | ||||| ||| |||    ||| | ||||||||||| || ||||       
T  25602379 tataagtaaaggtacgaagacttggagtagatagttcaattttgtcagttatggtaaatt-tgagtgaacggttatagatagataaattgactaggg--- 25602284  T
Q  141 cacttcacttgatatgatgaagacatgtgcatcccttacctcacacctacagatgaccaaactattcaaccttttaaaggataaaaagggctcattacaa 240  Q
       ||||||||||||||  |||||| |||| | ||||||||||||  |    |||||||||||||||||| |||||||||  |||||||| |||  ||||    
T  25602283 --tttcacttgatatgacaaagacacgtgcgttccttacctcacaattctgaatgaccaaactattcaacattttaaaggccaaaaagggttcaacacaa 25602186  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 19657757 - 19657802
Alignment:
Q  40 ggtataagtaaaggtacaaagacttggagcagatagcttaattttg 85  Q
    |||||||||||||||||||||||||| || ||||| || |||||||    
T  19657757 ggtataagtaaaggtacaaagacttgaagtagataactcaattttg 19657802  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 19674596 - 19674641
Alignment:
Q  40 ggtataagtaaaggtacaaagacttggagcagatagcttaattttg 85  Q
    |||||||||||||||||||||||||| || ||||| || |||||||    
T  19674596 ggtataagtaaaggtacaaagacttgaagtagataactcaattttg 19674641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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