View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_high_2 (Length: 488)
Name: NF10437_1D_high_2
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Original strand, 47269477 - 47269932
Alignment:
| Q |
10 |
ttggtgttaccatatcaacaacagtactcagtgattggtgatcactatattcagaaataagagcaataaacaatttgatacaaattcacttggaatgtac |
109 |
Q |
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| T |
47269477 |
ttggcgttaccatatcgacaacagtactcagtgattggtgatcactgtattcagaaataagagcaataaacaatttgatacaaattcacttggaatgtac |
47269576 |
T |
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| Q |
110 |
aatcgaatcaatggcaataaaaagtacctgagaggagaagggttgtaagcattggcaaagtttagaatctgatcattggtatctccctgagaaaaccagc |
209 |
Q |
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| T |
47269577 |
aatcgaatcaatggcaataaaaagtacctgagaggagaagggttgtaagcattggcaaagtttagaatctgatcattggtatctccctgagaaaaccagc |
47269676 |
T |
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| Q |
210 |
ctaatgcattctctgtagttccagcaataaatccatctacatctacagtttttgtaagatgtacctaatcataataattaatttatagttgcaaatttgc |
309 |
Q |
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| T |
47269677 |
ctaatgcattctctgtagttccagcaataaatccatctacatctacagtttttgtaagatgtacctaatcataataattaatttatagttgcaaatttgc |
47269776 |
T |
|
| Q |
310 |
aaccaataattagctacgataaagatatttcacgtgtatagtgttatcttgtatgttataaaacttactttttgcagttgcacttgttttagagtttcct |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47269777 |
aaccaataattagctacgataaagatatttcacgtgtatagtgttatcttgtatgttataaaacttacttttcgcagttgcacttgttttagagtttcct |
47269876 |
T |
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| Q |
410 |
gcaggacttgttcacgatattccgcctcacacaatgtggtaatctctgaaggatct |
465 |
Q |
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| T |
47269877 |
gcaggacttgttcacgatattccgcctcacacaatgtggtaatctctgaaggatct |
47269932 |
T |
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