View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_10 (Length: 346)
Name: NF10437_1D_low_10
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 346
Target Start/End: Original strand, 39176888 - 39177210
Alignment:
| Q |
19 |
actatatactagaagcacaaaagaaggagtttcctaaagataggaactataatctttccttgaaacaattttcttataacaatgaatactattactttta |
118 |
Q |
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| T |
39176888 |
actatatactagaagcacaaaagaaggagtttcctaaagataggaactataatctttccttgaaacacatg----ataacaatgaatactattactttta |
39176983 |
T |
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| Q |
119 |
acattcttatagctggacaattttcttttgttgactatattctattaacttcttgaacttgattgacaccgttgagttttactcctgaagtctttaacgg |
218 |
Q |
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| T |
39176984 |
acattcttatagctggacaattttcttttgttgactatattctattaacttcttgaactttattgacaccgttgagttttactcc-gaagtctttaacgg |
39177082 |
T |
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| Q |
219 |
atcactcattaataatgcataattatactgcatatacgcctctggcttggattcaattcgtcctcttgtcgagatttccttgctcccattttctgtagtg |
318 |
Q |
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| T |
39177083 |
atcactcattaataatgcataattatactgcatatacgcctctagcttggattcaattcgtcctcttgtcgagatttccttgctcccattttctgtagtg |
39177182 |
T |
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| Q |
319 |
tttatagtaataaggcaattgatcatgt |
346 |
Q |
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| T |
39177183 |
tttatagtaatagggcaattgatcatgt |
39177210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 29 - 346
Target Start/End: Original strand, 39172997 - 39173297
Alignment:
| Q |
29 |
agaagcacaaaagaaggagtttcctaaagataggaactataatctttccttgaaacaattttcttataacaatgaatactattacttttaacattcttat |
128 |
Q |
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| T |
39172997 |
agaagcacaaaagaaggggtttcctaaagatagaaactataatatttccttgaaacgaatg----ataacaatgaatagtttcacttttagcattcttat |
39173092 |
T |
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| Q |
129 |
agctggacaattttcttttgttgactatattctattaacttcttgaacttgattgacaccgttgagttttactcctgaagtctttaacggatcactcatt |
228 |
Q |
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| T |
39173093 |
agctggacaattttcttttgttgactataaaccattaacttcttgacctttattgacacaattgagttttactccggtagtctttaacggatcactcatt |
39173192 |
T |
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| Q |
229 |
aataatgcataattatactgcatatacgcctctggcttggattcaattcgtcctcttgtcgagatttccttgctcccattttctgtagtgtttatagtaa |
328 |
Q |
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| T |
39173193 |
aataa-------------tgcatatatgcctctagcttggattcaattcgtcttcttgtcgagatttccttcctcccattttctgtagtgtttatagtaa |
39173279 |
T |
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| Q |
329 |
taaggcaattgatcatgt |
346 |
Q |
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|| || |||| ||||||| |
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| T |
39173280 |
tatggaaattcatcatgt |
39173297 |
T |
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