View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10437_1D_low_12 (Length: 327)
Name: NF10437_1D_low_12
Description: NF10437_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10437_1D_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 1315656 - 1315970
Alignment:
| Q |
1 |
gtatcttgagttgttgtgtggggatagtgcaagtgagtaatgtaaatccaaagaatcctcttgggtgtgatgtaggtgaataatgtggctcaaatttagg |
100 |
Q |
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| T |
1315656 |
gtatcttgagttgttgtgtgggaatagtgcaagtgagtaatgtaaatccaaagaatcctcttgggtgtgatataggtgaataatgtggctcaagtttagg |
1315755 |
T |
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| Q |
101 |
aagacttgttgcgaggcaggtacgatatgatgcatatactcaagtcagccagagaagttgtgttgttttggtgcaaacaagccatgctgtgtttgacatt |
200 |
Q |
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| T |
1315756 |
aagacttgttgcgaggcaggtacgatatgatgcataaactcaagtcagccagagaagttgtgttgttttggtgcaaacaagccatgctgtgtatgacatg |
1315855 |
T |
|
| Q |
201 |
gagggacttagttgggactgtaaaatattgatcaaccggagg-gcttcatcatagtcatccgagtaacgcgacagatagacctcatacaaggcactcatc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1315856 |
gagggacttagttgggactgtaaaatattgatcaaccggaggagcttcatcatagtcatccgagtaacgcgacagatagacctcatacaaggcactcatc |
1315955 |
T |
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| Q |
300 |
ataccactgatgtcc |
314 |
Q |
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||||||||||||||| |
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| T |
1315956 |
ataccactgatgtcc |
1315970 |
T |
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